View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19802_low_6 (Length: 284)

Name: NF19802_low_6
Description: NF19802
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19802_low_6
NF19802_low_6
[»] chr3 (10 HSPs)
chr3 (22-279)||(12777913-12778170)
chr3 (22-276)||(15024254-15024508)
chr3 (22-276)||(6813419-6813667)
chr3 (23-159)||(20562017-20562153)
chr3 (23-159)||(20564325-20564461)
chr3 (23-159)||(20559709-20559845)
chr3 (23-167)||(13090217-13090358)
chr3 (23-167)||(9362367-9362508)
chr3 (23-167)||(13096373-13096514)
chr3 (22-68)||(3246922-3246968)
[»] chr7 (13 HSPs)
chr7 (22-276)||(9581453-9581707)
chr7 (22-276)||(9729305-9729559)
chr7 (22-276)||(16327176-16327430)
chr7 (22-276)||(4311279-4311532)
chr7 (22-276)||(540168-540416)
chr7 (22-276)||(8783498-8783752)
chr7 (107-276)||(14223144-14223313)
chr7 (23-167)||(23513729-23513873)
chr7 (23-167)||(4462117-4462261)
chr7 (23-167)||(5395800-5395944)
chr7 (23-160)||(13741088-13741225)
chr7 (23-167)||(10439748-10439892)
chr7 (23-160)||(12565670-12565807)
[»] chr5 (7 HSPs)
chr5 (22-276)||(23712116-23712370)
chr5 (23-167)||(21282320-21282465)
chr5 (23-167)||(20446255-20446399)
chr5 (23-167)||(18487473-18487617)
chr5 (23-105)||(23602050-23602129)
chr5 (23-167)||(24939193-24939334)
chr5 (23-105)||(24218554-24218633)
[»] chr4 (8 HSPs)
chr4 (22-272)||(42711184-42711434)
chr4 (22-276)||(14687181-14687435)
chr4 (22-276)||(15349253-15349501)
chr4 (23-112)||(11498023-11498112)
chr4 (23-159)||(45240267-45240404)
chr4 (23-105)||(18290742-18290824)
chr4 (23-167)||(10629410-10629551)
chr4 (40-149)||(11918125-11918233)
[»] scaffold0035 (1 HSPs)
scaffold0035 (22-276)||(51962-52216)
[»] scaffold0090 (1 HSPs)
scaffold0090 (22-276)||(29312-29566)
[»] chr8 (4 HSPs)
chr8 (22-276)||(20000852-20001103)
chr8 (23-241)||(20040479-20040697)
chr8 (23-167)||(21855186-21855327)
chr8 (23-159)||(17619412-17619545)
[»] scaffold0485 (1 HSPs)
scaffold0485 (22-276)||(11313-11568)
[»] chr1 (3 HSPs)
chr1 (22-276)||(27045424-27045672)
chr1 (56-168)||(22626469-22626580)
chr1 (23-105)||(21785853-21785932)
[»] chr6 (8 HSPs)
chr6 (22-276)||(22062920-22063168)
chr6 (22-276)||(19586983-19587222)
chr6 (23-276)||(23519161-23519414)
chr6 (23-167)||(18188979-18189123)
chr6 (23-149)||(17818194-17818320)
chr6 (22-105)||(18852742-18852822)
chr6 (22-67)||(29685293-29685338)
chr6 (23-64)||(24390285-24390326)
[»] chr2 (2 HSPs)
chr2 (23-276)||(25339516-25339769)
chr2 (23-233)||(24500924-24501134)
[»] scaffold0220 (1 HSPs)
scaffold0220 (41-167)||(11741-11867)
[»] scaffold0222 (1 HSPs)
scaffold0222 (23-167)||(18488-18632)
[»] scaffold0566 (1 HSPs)
scaffold0566 (23-159)||(1275-1411)
[»] scaffold0026 (1 HSPs)
scaffold0026 (56-165)||(17029-17138)
[»] scaffold0113 (1 HSPs)
scaffold0113 (23-167)||(38043-38184)
[»] scaffold1184 (1 HSPs)
scaffold1184 (30-64)||(537-571)
[»] scaffold0012 (2 HSPs)
scaffold0012 (23-102)||(12854-12930)
scaffold0012 (23-102)||(8745-8821)


Alignment Details
Target: chr3 (Bit Score: 238; Significance: 1e-132; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 22 - 279
Target Start/End: Original strand, 12777913 - 12778170
Alignment:
Q  22 ttgtacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtccgaattaggtagaataatcaaacaattagttctaata 121  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  12777913 ttgtacctgtgggttagtaccaacataaagcaaattttccaccacctccgaattagtaatgtccgaattaggtagaataatcaaacaattagttctaata 12778012  T
Q  122 atcctccattcatattggtaattgtgagtagggtcatgggttctaaggaaggacaaagtagtgagagtatataagtttggataataattttcctctatcc 221  Q
    || |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  12778013 attctccattcatattgataattgtgagtagggtcatgggttctaaggaaggacaaagtagtgagagtaaataagtttggataataattttcctctatcc 12778112  T
Q  222 tcttgatcccttgattcacactcaccctaaacctcttagcaataaaagtgatgatgtc 279  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  12778113 tcttgatcccttgattcacactcaccctaaacctcttagcaataaaagggatgatgtc 12778170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 22 - 276
Target Start/End: Complemental strand, 15024508 - 15024254
Alignment:
Q  22 ttgtacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtccgaattaggtagaataatcaaacaattagttctaata 121  Q
    |||||| ||||| ||||||||||||||| |||||||||||||||||||||||||||| ||||| | ||||||||||||||| |||||||||| |||| ||    
T  15024508 ttgtacatgtggattagtaccaacataatgcaaattttccaccacctccggattagttatgtctggattaggtagaataataaaacaattagctctatta 15024409  T
Q  122 atcctccattcatattggtaattgtgagtagggtcatgggttctaaggaaggacaaagtagtgagagtatataagtttggataataattttcctctatcc 221  Q
    || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||| |   |||||||||    
T  15024408 attctccattcatattggtaattgtgagtagggtcatgggttctaaggaaggacaaagtagtgagagtatataagtatagataatagtacccctctatcc 15024309  T
Q  222 tcttgatcccttgattcacactcaccctaaacctcttagcaataaaagtgatgat 276  Q
    ||||||||||||||||||||||||||| |||| |  |||||||||||||||||||    
T  15024308 tcttgatcccttgattcacactcaccccaaactttctagcaataaaagtgatgat 15024254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 22 - 276
Target Start/End: Complemental strand, 6813667 - 6813419
Alignment:
Q  22 ttgtacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtccgaattaggtagaataatcaaacaattagttctaata 121  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||     
T  6813667 ttgtacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtccgaattaggtagaataatcaaacaattagctctaatg 6813568  T
Q  122 atcctccattcatattggtaattgtgagtagggtcatgggttctaaggaaggacaaagtagtgagagtatataagtttggataataattttcctctatcc 221  Q
    || |||||| ||||||||||||||||||||| ||||||| || ||||||| ||||||||      |||||| |||||| ||||||| || || |||||||    
T  6813567 attctccatgcatattggtaattgtgagtagagtcatggtttttaaggaatgacaaagt------agtataaaagtttagataatagttctcatctatcc 6813474  T
Q  222 tcttgatcccttgattcacactcaccctaaacctcttagcaataaaagtgatgat 276  Q
    |||||||||||||||||| |||||||  |||| ||||||||||||||||||||||    
T  6813473 tcttgatcccttgattcatactcacctcaaacttcttagcaataaaagtgatgat 6813419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 23 - 159
Target Start/End: Complemental strand, 20562153 - 20562017
Alignment:
Q  23 tgtacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtccgaattaggtagaataatcaaacaattagttctaataa 122  Q
    ||||||||||||||||| |||||| ||| | | ||||| |||||||||| ||||||||| || ||||||||||||||||||||  |||||||  || | |    
T  20562153 tgtacctgtgggttagtgccaacacaaacctagttttctaccacctccgaattagtaatatctgaattaggtagaataatcaagaaattagtagtattga 20562054  T
Q  123 tcctccattcatattggtaattgtgagtagggtcatg 159  Q
      ||||| ||||||||||||||||||| |||| ||||    
T  20562053 ctctccactcatattggtaattgtgagaagggccatg 20562017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 23 - 159
Target Start/End: Complemental strand, 20564461 - 20564325
Alignment:
Q  23 tgtacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtccgaattaggtagaataatcaaacaattagttctaataa 122  Q
    ||||||||||||||||| |||||| ||| | | ||||| |||||||||| ||||||||| || ||||||||||||||||||||  |||||||  || | |    
T  20564461 tgtacctgtgggttagtgccaacacaaacctagttttctaccacctccgaattagtaatatctgaattaggtagaataatcaagaaattagtagtattga 20564362  T
Q  123 tcctccattcatattggtaattgtgagtagggtcatg 159  Q
      ||||| ||||||||||||||||||| |||| ||||    
T  20564361 ctctccactcatattggtaattgtgagaagggccatg 20564325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 23 - 159
Target Start/End: Complemental strand, 20559845 - 20559709
Alignment:
Q  23 tgtacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtccgaattaggtagaataatcaaacaattagttctaataa 122  Q
    |||| |||||||||||| |||||| ||| | | ||||| |||||||||| ||||||||| || ||||||||||||||||||||  |||||||  || | |    
T  20559845 tgtatctgtgggttagtgccaacacaaacctagttttctaccacctccgaattagtaatatctgaattaggtagaataatcaagaaattagtagtattga 20559746  T
Q  123 tcctccattcatattggtaattgtgagtagggtcatg 159  Q
      ||||| ||||||||||||||||||| |||| ||||    
T  20559745 ctctccactcatattggtaattgtgagaagggccatg 20559709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 23 - 167
Target Start/End: Original strand, 13090217 - 13090358
Alignment:
Q  23 tgtacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtccgaattaggtagaataatcaaacaattagttctaataa 122  Q
    ||||||||||||||||| ||||||||||   | ||||| ||||||| |||||||||||| || ||||||||||||||||||||  ||||||   || | |    
T  13090217 tgtacctgtgggttagtgccaacataaa---agttttctaccaccttcggattagtaatatctgaattaggtagaataatcaagaaattagcattattga 13090313  T
Q  123 tcctccattcatattggtaattgtgagtagggtcatgggttctaa 167  Q
      | ||| ||||||||| ||||||||| |||| ||||| ||||||    
T  13090314 ctcaccactcatattgggaattgtgagaagggccatggattctaa 13090358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 23 - 167
Target Start/End: Original strand, 9362367 - 9362508
Alignment:
Q  23 tgtacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtccgaattaggtagaataatcaaacaattagttctaataa 122  Q
    ||||||||||||||||| ||||||||||   | ||||| ||||||| |||||||||||| |  ||||||||||||||||||||  ||||||   || | |    
T  9362367 tgtacctgtgggttagtgccaacataaa---agttttctaccaccttcggattagtaatatttgaattaggtagaataatcaagaaattagcattattga 9362463  T
Q  123 tcctccattcatattggtaattgtgagtagggtcatgggttctaa 167  Q
      ||||| |||||||||  |||||||| |||| ||||| ||||||    
T  9362464 ctctccactcatattggggattgtgagaagggccatggattctaa 9362508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 23 - 167
Target Start/End: Complemental strand, 13096514 - 13096373
Alignment:
Q  23 tgtacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtccgaattaggtagaataatcaaacaattagttctaataa 122  Q
    |||||||||||||||||  |||||||||   | ||||| ||||||| |||||||||||| || ||||||||||||||||||||  ||||||   || | |    
T  13096514 tgtacctgtgggttagtgtcaacataaa---agttttctaccaccttcggattagtaatatctgaattaggtagaataatcaagaaattagaattattga 13096418  T
Q  123 tcctccattcatattggtaattgtgagtagggtcatgggttctaa 167  Q
      ||||| |||| |||| ||||||||| |||| ||||| ||||||    
T  13096417 ctctccactcatgttgggaattgtgagaagggccatggattctaa 13096373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 22 - 68
Target Start/End: Original strand, 3246922 - 3246968
Alignment:
Q  22 ttgtacctgtgggttagtaccaacataaagcaaattttccaccacct 68  Q
    |||||||||||||||||||| || ||||| |||||||||||||||||    
T  3246922 ttgtacctgtgggttagtacaaaaataaaacaaattttccaccacct 3246968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 235; Significance: 1e-130; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 22 - 276
Target Start/End: Complemental strand, 9581707 - 9581453
Alignment:
Q  22 ttgtacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtccgaattaggtagaataatcaaacaattagttctaata 121  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9581707 ttgtacctgtgggttagtaccaacataaagcaaattttccaccacctccagattagtaatgtccgaattaggtagaataatcaaacaattagttctaata 9581608  T
Q  122 atcctccattcatattggtaattgtgagtagggtcatgggttctaaggaaggacaaagtagtgagagtatataagtttggataataattttcctctatcc 221  Q
    ||||||||||||||||| |||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||    
T  9581607 atcctccattcatattgataattgtgagtatggtcatgggttctaaggaaagacaaagtagtgagagtatataagtttggataataattttcatctatcc 9581508  T
Q  222 tcttgatcccttgattcacactcaccctaaacctcttagcaataaaagtgatgat 276  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9581507 tcttgatcccttgattcacactcaccctaaacctcttagcaataaaagtgatgat 9581453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 22 - 276
Target Start/End: Complemental strand, 9729559 - 9729305
Alignment:
Q  22 ttgtacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtccgaattaggtagaataatcaaacaattagttctaata 121  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  9729559 ttgtacctgtggattagtaccaacataaagcaaattttccaccacctccggattagtaatgtctgaattaggtagaataatcaaacaattagttctaata 9729460  T
Q  122 atcctccattcatattggtaattgtgagtagggtcatgggttctaaggaaggacaaagtagtgagagtatataagtttggataataattttcctctatcc 221  Q
    ||||||||||||||||| |||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||    
T  9729459 atcctccattcatattgataattgtgagtatggtcatgggttctaaggaaagacaaagtagtgagagtatataagtttggataataattttcatctatcc 9729360  T
Q  222 tcttgatcccttgattcacactcaccctaaacctcttagcaataaaagtgatgat 276  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9729359 tcttgatcccttgattcacactcaccctaaacctcttagcaataaaagtgatgat 9729305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 22 - 276
Target Start/End: Original strand, 16327176 - 16327430
Alignment:
Q  22 ttgtacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtccgaattaggtagaataatcaaacaattagttctaata 121  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||    
T  16327176 ttgtacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtccgaattaggtagaatagtcaaacaattagctctaata 16327275  T
Q  122 atcctccattcatattggtaattgtgagtagggtcatgggttctaaggaaggacaaagtagtgagagtatataagtttggataataattttcctctatcc 221  Q
    || ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||| ||||||| |||||||||||||    
T  16327276 attctccattcatattggtaattgtgagtagggtcatgggttataaggaaggacaaagtagtaagagtatataagtttagataatagttttcctctatcc 16327375  T
Q  222 tcttgatcccttgattcacactcaccctaaacctcttagcaataaaagtgatgat 276  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16327376 tcttgatcccttgattcacactcaccctaaacctcttagcaataaaagtgatgat 16327430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 22 - 276
Target Start/End: Complemental strand, 4311532 - 4311279
Alignment:
Q  22 ttgtacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtccgaattaggtagaataatcaaacaattagttctaata 121  Q
    |||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  4311532 ttgtacatgtgggttagtaccaacgtaaagcaaattttccaccacctccggattagtaatgtccgaattaggtagaataatcaaacaattagctctaata 4311433  T
Q  122 atcctccattcatattggtaattgtgagtagggtcatgggttctaaggaaggacaaagtagtgagagtatataagtttggataataattttcctctatcc 221  Q
    || |||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||| | ||||||| ||  |||||||||    
T  4311432 attctccattcatattggtaattgtgagtagggccatgggttctaagaaaggacaaagtagtgagagtatataagtctagataatagttcccctctatcc 4311333  T
Q  222 tcttgatcccttgattcacactcaccctaaacctcttagcaataaaagtgatgat 276  Q
    |||||||| |||||||||||||| ||| |||| || ||| |||||| ||||||||    
T  4311332 tcttgatctcttgattcacactc-ccccaaacttcctagaaataaaggtgatgat 4311279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 176; E-Value: 7e-95
Query Start/End: Original strand, 22 - 276
Target Start/End: Original strand, 540168 - 540416
Alignment:
Q  22 ttgtacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtccgaattaggtagaataatcaaacaattagttctaata 121  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||     
T  540168 ttgtacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtccgaattaggtagaataatcaaacaattagctttaatg 540267  T
Q  122 atcctccattcatattggtaattgtgagtagggtcatgggttctaaggaaggacaaagtagtgagagtatataagtttggataataattttcctctatcc 221  Q
    || |||| |||||||||||||||||||||||||||||||||| ||||||| ||||||||      |||||| |||||| ||||||| || || |||||||    
T  540268 attctcctttcatattggtaattgtgagtagggtcatgggttttaaggaatgacaaagt------agtataaaagtttagataatagttctcatctatcc 540361  T
Q  222 tcttgatcccttgattcacactcaccctaaacctcttagcaataaaagtgatgat 276  Q
    ||||||||||||||||||||||||||| |||| ||||||||||||||||||||||    
T  540362 tcttgatcccttgattcacactcaccccaaacttcttagcaataaaagtgatgat 540416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 22 - 276
Target Start/End: Original strand, 8783498 - 8783752
Alignment:
Q  22 ttgtacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtccgaattaggtagaataatcaaacaattagttctaata 121  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||| |||||  | |||||    
T  8783498 ttgtacatgtgggttagtaccaacataaagcaaattttccaccacctccggattagttatgtccgaattagggagaataatcaaaaaattatctgtaata 8783597  T
Q  122 atcctccattcatattggtaattgtgagtagggtcatgggttctaaggaaggacaaagtagtgagagtatataagtttggataataattttcctctatcc 221  Q
    || |||| |||||||| |||||||||||||||| |||||||| ||||||||| ||||||||||||||||||||||| | ||||||| ||  |||||||||    
T  8783598 attctcctttcatatttgtaattgtgagtagggccatgggttgtaaggaagggcaaagtagtgagagtatataagtctagataatagttcccctctatcc 8783697  T
Q  222 tcttgatcccttgattcacactcaccctaaacctcttagcaataaaagtgatgat 276  Q
     |||||||| ||||||||||||||||| |||| || |||||||||| ||||||||    
T  8783698 ccttgatccattgattcacactcaccccaaacttcctagcaataaaggtgatgat 8783752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 107 - 276
Target Start/End: Original strand, 14223144 - 14223313
Alignment:
Q  107 caattagttctaataatcctccattcatattggtaattgtgagtagggtcatgggttctaaggaaggacaaagtagtgagagtatataagtttggataat 206  Q
    ||||||| |||||| || ||||||||||||||||||||||||||||||||||||| | ||||||| ||||||||||||||||||||||||||| ||||||    
T  14223144 caattagctctaatgattctccattcatattggtaattgtgagtagggtcatgggctttaaggaatgacaaagtagtgagagtatataagtttagataat 14223243  T
Q  207 aattttcctctatcctcttgatcccttgattcacactcaccctaaacctcttagcaataaaagtgatgat 276  Q
    | || |||||| |||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||    
T  14223244 agttctcctctttcctcttgatcccttgattcacactcaccccaaacttcttagcaataaaagtgatgat 14223313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 23 - 167
Target Start/End: Complemental strand, 23513873 - 23513729
Alignment:
Q  23 tgtacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtccgaattaggtagaataatcaaacaattagttctaataa 122  Q
    ||||||||||||||||| ||||||||||  || ||||| ||||||||||||||||||||||||||||||||||||||||||||  ||||||   || | |    
T  23513873 tgtacctgtgggttagtgccaacataaacaaagttttctaccacctccggattagtaatgtccgaattaggtagaataatcaagtaattagcattattga 23513774  T
Q  123 tcctccattcatattggtaattgtgagtagggtcatgggttctaa 167  Q
      ||||| |||||| |||||||||||| |||| ||||| ||||||    
T  23513773 ctctccactcatataggtaattgtgagaagggccatggattctaa 23513729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 23 - 167
Target Start/End: Original strand, 4462117 - 4462261
Alignment:
Q  23 tgtacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtccgaattaggtagaataatcaaacaattagttctaataa 122  Q
    |||||| ||||||||||||||| ||||||||||||||||||||||| ||| ||||| |||  || ||||||||||||||||||||||| || |||||| |    
T  4462117 tgtaccagtgggttagtaccaatataaagcaaattttccaccaccttcgggttagttatgaacggattaggtagaataatcaaacaatgagctctaatga 4462216  T
Q  123 tcctccattcatattggtaattgtgagtagggtcatgggttctaa 167  Q
    |  || | |||||||||| ||||||||| ||  |||| |||||||    
T  4462217 ttttctaatcatattggtcattgtgagtcggtccatgagttctaa 4462261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 23 - 167
Target Start/End: Complemental strand, 5395944 - 5395800
Alignment:
Q  23 tgtacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtccgaattaggtagaataatcaaacaattagttctaataa 122  Q
    ||||||||||||||||| |||||||||| ||| ||||| |||||||||||||||||||| || ||||||||||||||||||||  ||||||   || | |    
T  5395944 tgtacctgtgggttagtgccaacataaaccaagttttctaccacctccggattagtaatatctgaattaggtagaataatcaagaaattagcattattga 5395845  T
Q  123 tcctccattcatattggtaattgtgagtagggtcatgggttctaa 167  Q
      ||||| |||| ||||||||||| || |||||| ||| ||||||    
T  5395844 cgctccactcattttggtaattgttagaagggtcgtggattctaa 5395800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 23 - 160
Target Start/End: Complemental strand, 13741225 - 13741088
Alignment:
Q  23 tgtacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtccgaattaggtagaataatcaaacaattagttctaataa 122  Q
    ||||||||||| ||||| ||||||||||   | ||||| |||||||||| ||||||||||||||||||||||||||||||||| ||||||    || | |    
T  13741225 tgtacctgtggattagtgccaacataaacatagttttctaccacctccgaattagtaatgtccgaattaggtagaataatcaagcaattatcattattga 13741126  T
Q  123 tcctccattcatattggtaattgtgagtagggtcatgg 160  Q
      ||||| ||||||||||||||||||| |||| |||||    
T  13741125 ctctccactcatattggtaattgtgagaagggccatgg 13741088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 23 - 167
Target Start/End: Original strand, 10439748 - 10439892
Alignment:
Q  23 tgtacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtccgaattaggtagaataatcaaacaattagttctaataa 122  Q
    ||||||||||||||||| |||||||||| ||| ||||| ||||||| | | |||||||| || ||||||||||||||||||||  |||||    || | |    
T  10439748 tgtacctgtgggttagtgccaacataaaccaagttttctaccaccttcagcttagtaatatctgaattaggtagaataatcaagaaattatcattattga 10439847  T
Q  123 tcctccattcatattggtaattgtgagtagggtcatgggttctaa 167  Q
      ||||| ||||||||||||||||||| ||||  |||||||||||    
T  10439848 ctctccactcatattggtaattgtgagaagggctatgggttctaa 10439892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 23 - 160
Target Start/End: Complemental strand, 12565807 - 12565670
Alignment:
Q  23 tgtacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtccgaattaggtagaataatcaaacaattagttctaataa 122  Q
    |||||| ||||||||||||||||||||| ||| ||||| |||||||||| ||||||||| || |||||||||  |||||||||  ||||||   || | |    
T  12565807 tgtaccggtgggttagtaccaacataaaccaagttttctaccacctccgaattagtaatatctgaattaggttaaataatcaagaaattagcattattga 12565708  T
Q  123 tcctccattcatattggtaattgtgagtagggtcatgg 160  Q
      ||||| |||||||||||||||| || |||| |||||    
T  12565707 ctctccactcatattggtaattgttagaagggccatgg 12565670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 231; Significance: 1e-127; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 22 - 276
Target Start/End: Original strand, 23712116 - 23712370
Alignment:
Q  22 ttgtacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtccgaattaggtagaataatcaaacaattagttctaata 121  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  23712116 ttgtacctgtgggttaggaccaacataaagcaaattttccaccacctccggattagtaatgtccgaattaggtagaataatcaaaaaattagttctaata 23712215  T
Q  122 atcctccattcatattggtaattgtgagtagggtcatgggttctaaggaaggacaaagtagtgagagtatataagtttggataataattttcctctatcc 221  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||    
T  23712216 atcctccattcatattggtaattgtgagtatggtcatgggttctaaggaaagacaaagtagtgagagtatataagtttggataataattttcatctatcc 23712315  T
Q  222 tcttgatcccttgattcacactcaccctaaacctcttagcaataaaagtgatgat 276  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  23712316 tcttgatcccttgattcacactcaccctaaacctcttagcaacaaaagtgatgat 23712370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 23 - 167
Target Start/End: Original strand, 21282320 - 21282465
Alignment:
Q  23 tgtacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtccgaattaggtagaataatcaaacaa-ttagttctaata 121  Q
    ||||||||||||||||| |||||||||| ||| ||||| |||||||||||||||||||| | |||||| |||||||||||||| ||| ||||   || |     
T  21282320 tgtacctgtgggttagtgccaacataaaccaagttttctaccacctccggattagtaatattcgaatttggtagaataatcaagcaatttagcgttattg 21282419  T
Q  122 atcctccattcatattggtaattgtgagtagggtcatgggttctaa 167  Q
    |  ||||| ||||||||||||||||||| ||||| |||| ||||||    
T  21282420 actctccactcatattggtaattgtgagaagggttatggattctaa 21282465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 23 - 167
Target Start/End: Original strand, 20446255 - 20446399
Alignment:
Q  23 tgtacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtccgaattaggtagaataatcaaacaattagttctaataa 122  Q
    ||||||||||||||||| |||||||||| ||| ||||| ||||||| |||||||||||| || ||||||||||||||||||||  ||||||   || | |    
T  20446255 tgtacctgtgggttagtgccaacataaaccaagttttctaccaccttcggattagtaatatctgaattaggtagaataatcaagaaattagcattattga 20446354  T
Q  123 tcctccattcatattggtaattgtgagtagggtcatgggttctaa 167  Q
      ||||| ||||||||||||||||||| ||||  ||| |||||||    
T  20446355 ctctccactcatattggtaattgtgagaagggctatgagttctaa 20446399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 23 - 167
Target Start/End: Original strand, 18487473 - 18487617
Alignment:
Q  23 tgtacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtccgaattaggtagaataatcaaacaattagttctaataa 122  Q
    ||||||||||||||||| |||||||||| ||| ||||| |||||||| |||||| |||| || ||||||||||||||||||||  ||||||   || | |    
T  18487473 tgtacctgtgggttagtgccaacataaaccaagttttctaccacctcaggattaataatatctgaattaggtagaataatcaagaaattagcattattga 18487572  T
Q  123 tcctccattcatattggtaattgtgagtagggtcatgggttctaa 167  Q
      ||||| |||||||||||||||| |  |||| ||||| ||||||    
T  18487573 ctctccactcatattggtaattgttataagggccatggattctaa 18487617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 23 - 105
Target Start/End: Original strand, 23602050 - 23602129
Alignment:
Q  23 tgtacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtccgaattaggtagaataatcaa 105  Q
    ||||||||||||||||| ||||||||||   | ||||| ||||||| |||||||||||| || ||||||||||||||||||||    
T  23602050 tgtacctgtgggttagtgccaacataaa---agttttctaccaccttcggattagtaatatctgaattaggtagaataatcaa 23602129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 23 - 167
Target Start/End: Complemental strand, 24939334 - 24939193
Alignment:
Q  23 tgtacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtccgaattaggtagaataatcaaacaattagttctaataa 122  Q
    ||||||||||||||||| ||||||||||   | ||||| ||||||| || ||||||||| || ||||||||||||||||||||  ||||||   || | |    
T  24939334 tgtacctgtgggttagtgccaacataaa---agttttctaccaccttcgaattagtaatatctgaattaggtagaataatcaagaaattagcattattga 24939238  T
Q  123 tcctccattcatattggtaattgtgagtagggtcatgggttctaa 167  Q
      | ||| ||||||||| ||||||||| |||| ||||| ||||||    
T  24939237 ctcgccactcatattgggaattgtgagaagggccatggattctaa 24939193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 23 - 105
Target Start/End: Complemental strand, 24218633 - 24218554
Alignment:
Q  23 tgtacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtccgaattaggtagaataatcaa 105  Q
    ||||| ||||||||||| |||||||||    | ||||| |||| ||||||||||||||| || ||||||||||||||||||||    
T  24218633 tgtacatgtgggttagtgccaacataat---agttttctaccatctccggattagtaatatctgaattaggtagaataatcaa 24218554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 227; Significance: 1e-125; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 22 - 272
Target Start/End: Original strand, 42711184 - 42711434
Alignment:
Q  22 ttgtacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtccgaattaggtagaataatcaaacaattagttctaata 121  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42711184 ttgtacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtccgaattaggtagaataatcaaacaattagttctaata 42711283  T
Q  122 atcctccattcatattggtaattgtgagtagggtcatgggttctaaggaaggacaaagtagtgagagtatataagtttggataataattttcctctatcc 221  Q
    || |||||||||||||||||||| |||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||    
T  42711284 attctccattcatattggtaattatgagtatggtcatgggttctaaggaaagacaaagtagtgagagtatataagtttggataataattttcatctatcc 42711383  T
Q  222 tcttgatcccttgattcacactcaccctaaacctcttagcaataaaagtga 272  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  42711384 tcttgatcctttgattcacactcaccctaaacctcttagcaataaaagtga 42711434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 22 - 276
Target Start/End: Original strand, 14687181 - 14687435
Alignment:
Q  22 ttgtacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtccgaattaggtagaataatcaaacaattagttctaata 121  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||| |||||||    
T  14687181 ttgtacctgtgggttagtaccaacataaagcaaattttccaccgcctccggattagtaatgtccgaattaggtagcataatcaaacaattagctctaata 14687280  T
Q  122 atcctccattcatattggtaattgtgagtagggtcatgggttctaaggaaggacaaagtagtgagagtatataagtttggataataattttcctctatcc 221  Q
    || ||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||| || ||||||||||    
T  14687281 attctccatttatattggtaattgtgagtagggtcatgggttctaaggaatgacaaagtagtgagagtatataagtttagataatagttctcctctatcc 14687380  T
Q  222 tcttgatcccttgattcacactcaccctaaacctcttagcaataaaagtgatgat 276  Q
    ||||||||||||||||||||||||||| |||| ||||||||||||||||||||||    
T  14687381 tcttgatcccttgattcacactcaccccaaacttcttagcaataaaagtgatgat 14687435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 22 - 276
Target Start/End: Original strand, 15349253 - 15349501
Alignment:
Q  22 ttgtacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtccgaattaggtagaataatcaaacaattagttctaata 121  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||     
T  15349253 ttgtacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtccgaattaggtagaataatcaaacaattagctctaatg 15349352  T
Q  122 atcctccattcatattggtaattgtgagtagggtcatgggttctaaggaaggacaaagtagtgagagtatataagtttggataataattttcctctatcc 221  Q
    || ||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||      |||||| |||||| ||||||| || || |||||||    
T  15349353 attctccattcatattggtaattgtgagtagggtcatgggttttaaggaatgacaaagt------agtataaaagtttagataatagttctcatctatcc 15349446  T
Q  222 tcttgatcccttgattcacactcaccctaaacctcttagcaataaaagtgatgat 276  Q
    |||||||||||||||||| |||||||| |||| ||||||||||||||||||||||    
T  15349447 tcttgatcccttgattcatactcaccccaaacttcttagcaataaaagtgatgat 15349501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 23 - 112
Target Start/End: Original strand, 11498023 - 11498112
Alignment:
Q  23 tgtacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtccgaattaggtagaataatcaaacaatta 112  Q
    ||||||||||||||||| |||||||||| ||| ||||| |||||||||||||||||||| |  |||||||||||||||||||| ||||||    
T  11498023 tgtacctgtgggttagtgccaacataaaccaagttttctaccacctccggattagtaatatttgaattaggtagaataatcaagcaatta 11498112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 23 - 159
Target Start/End: Original strand, 45240267 - 45240404
Alignment:
Q  23 tgtacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtccgaattaggtagaataatcaaacaa-ttagttctaata 121  Q
    ||||||||||||||||| |||||||||| ||| ||||| |||||||||||||||||||| | |||||| |||||||||||||| ||| ||||   || |     
T  45240267 tgtacctgtgggttagtgccaacataaaccaagttttctaccacctccggattagtaatattcgaatttggtagaataatcaagcaatttagcgttattg 45240366  T
Q  122 atcctccattcatattggtaattgtgagtagggtcatg 159  Q
    |  ||||| ||||||||||||||||||| |||| ||||    
T  45240367 actctccactcatattggtaattgtgagaagggccatg 45240404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 23 - 105
Target Start/End: Complemental strand, 18290824 - 18290742
Alignment:
Q  23 tgtacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtccgaattaggtagaataatcaa 105  Q
    ||||||||||||||||| |||||||||| ||| ||||| | |||||||||||||||||| || ||||||||||||||||||||    
T  18290824 tgtacctgtgggttagtgccaacataaaccaagttttctatcacctccggattagtaatatctgaattaggtagaataatcaa 18290742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 23 - 167
Target Start/End: Complemental strand, 10629551 - 10629410
Alignment:
Q  23 tgtacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtccgaattaggtagaataatcaaacaattagttctaataa 122  Q
    ||||||||||||||||| ||||||||||   | ||||| ||| ||| |||||||||||| || ||||||||||||||||||||  ||||||   || | |    
T  10629551 tgtacctgtgggttagtgccaacataaa---agttttctaccgccttcggattagtaatatctgaattaggtagaataatcaagaaattagcattattga 10629455  T
Q  123 tcctccattcatattggtaattgtgagtagggtcatgggttctaa 167  Q
      ||||| ||||||||| ||||||||| |||| ||||| ||||||    
T  10629454 ctctccactcatattgggaattgtgagaagggccatggattctaa 10629410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 40 - 149
Target Start/End: Original strand, 11918125 - 11918233
Alignment:
Q  40 accaacataaagcaaattttccaccacctccggattagtaatgtccgaattaggtagaataatcaaacaattagttctaataatcctccattcatattgg 139  Q
    ||||||||||| ||| ||||||||||||| ||| ||||| ||||||| ||||||||||||||||||| ||||||  ||| | |   |||| |||||||||    
T  11918125 accaacataaaacaatttttccaccaccttcgggttagttatgtccggattaggtagaataatcaaa-aattagccctattgactttccactcatattgg 11918223  T
Q  140 taattgtgag 149  Q
    ||||||||||    
T  11918224 taattgtgag 11918233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0035 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: scaffold0035
Description:

Target: scaffold0035; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 22 - 276
Target Start/End: Original strand, 51962 - 52216
Alignment:
Q  22 ttgtacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtccgaattaggtagaataatcaaacaattagttctaata 121  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||| |||||||    
T  51962 ttgtacctgtgggttagtaccaacataaagcaaattttccaccacctccggaatagtaatgtccgaattaggtagaatagtcaaacaattagctctaata 52061  T
Q  122 atcctccattcatattggtaattgtgagtagggtcatgggttctaaggaaggacaaagtagtgagagtatataagtttggataataattttcctctatcc 221  Q
    || ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||| ||||||| |||||||||||||    
T  52062 attctccattcatattggtaattgtgagtagggtcatgggttataaggaaggacaaagtagtaagagtatataagtttagataatagttttcctctatcc 52161  T
Q  222 tcttgatcccttgattcacactcaccctaaacctcttagcaataaaagtgatgat 276  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52162 tcttgatcccttgattcacactcaccctaaacctcttagcaataaaagtgatgat 52216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0090 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: scaffold0090
Description:

Target: scaffold0090; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 22 - 276
Target Start/End: Complemental strand, 29566 - 29312
Alignment:
Q  22 ttgtacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtccgaattaggtagaataatcaaacaattagttctaata 121  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||     
T  29566 ttgtacctgtgggttagtaccaacataaagcaaattttctaccacctccggattagtaatgtccgaattaggtagaataatcatacaattagctctaatg 29467  T
Q  122 atcctccattcatattggtaattgtgagtagggtcatgggttctaaggaaggacaaagtagtgagagtatataagtttggataataattttcctctatcc 221  Q
    || ||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||| |||||| ||||||| || || |||||||    
T  29466 attctccattcatattggtaattgtgagtagggtcatgggttttaaggaatgacaaagtagtgagagtataaaagtttagataatagttctcatctatcc 29367  T
Q  222 tcttgatcccttgattcacactcaccctaaacctcttagcaataaaagtgatgat 276  Q
    |||||||||||||||||| |||||||| |||| ||||||||||||||||||||||    
T  29366 tcttgatcccttgattcatactcaccccaaacttcttagcaataaaagtgatgat 29312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 193; Significance: 1e-105; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 22 - 276
Target Start/End: Complemental strand, 20001103 - 20000852
Alignment:
Q  22 ttgtacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtccgaattaggtagaataatcaaacaattagttctaata 121  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||     
T  20001103 ttgtacctgtgggttagtaccaacataaagcaaattttccaccacctccagattagtaatgtccgaattaggtagaataatcaaacaattagctctaatg 20001004  T
Q  122 atcctccattcatattggtaattgtgagtagggtcatgggttctaaggaaggacaaagtagtgagagtatataagtttggataataattttcctctatcc 221  Q
    || ||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||| |||||| ||||||| || || |||||||    
T  20001003 attctccattcatattggtaattgtgagtagggtcatgggttttaaggaatgacaaagtagtgagagtataaaagtttagataatagttctcatctatcc 20000904  T
Q  222 tcttgatcccttgattcacactcaccctaaacctcttagcaataaaagtgatgat 276  Q
    ||||||||||||||||||||||||||| |||   |||||||||||||||||||||    
T  20000903 tcttgatcccttgattcacactcaccccaaa---cttagcaataaaagtgatgat 20000852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 23 - 241
Target Start/End: Original strand, 20040479 - 20040697
Alignment:
Q  23 tgtacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtccgaattaggtagaataatcaaacaattagttctaataa 122  Q
    ||||||||||||||||| |||||||||| | | ||||| |||||||| ||||||||||| || ||||||||||||||||||||  |||||||  || | |    
T  20040479 tgtacctgtgggttagtgccaacataaacctagttttctaccacctctggattagtaatatctgaattaggtagaataatcaagaaattagtagtattga 20040578  T
Q  123 tcctccattcatattggtaattgtgagtagggtcatgggttctaaggaaggacaaagtagtgagagtatataagtttggataataattttcctctatcct 222  Q
      ||||| ||||||||||||||||||| |||| ||||  ||||||  ||  |||  |||||||| || | ||||| | |||| || ||| |||| |||||    
T  20040579 ctctccactcatattggtaattgtgagaagggccatgaattctaaaaaaaaacatggtagtgagggtttctaagtctagatagtagtttccctcaatcct 20040678  T
Q  223 cttgatcccttgattcaca 241  Q
     || ||||||| |||||||    
T  20040679 atttatccctttattcaca 20040697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 23 - 167
Target Start/End: Original strand, 21855186 - 21855327
Alignment:
Q  23 tgtacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtccgaattaggtagaataatcaaacaattagttctaataa 122  Q
    ||||||||| ||||||| ||||||||||   | ||||| ||||||| |||||||||||| || ||||||||||||||||||||  ||||||   || | |    
T  21855186 tgtacctgtaggttagtgccaacataaa---agttttctaccaccttcggattagtaatatctgaattaggtagaataatcaagaaattagcattattga 21855282  T
Q  123 tcctccattcatattggtaattgtgagtagggtcatgggttctaa 167  Q
      ||||| ||||||||||||||||||| ||||| |||||||||||    
T  21855283 ctctccactcatattggtaattgtgagaagggttatgggttctaa 21855327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 23 - 159
Target Start/End: Complemental strand, 17619545 - 17619412
Alignment:
Q  23 tgtacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtccgaattaggtagaataatcaaacaattagttctaataa 122  Q
    ||||||||||||||||| ||||||||||   | ||||| ||||||| |||||||||||| || ||||||||||||||||||||  ||||||   || | |    
T  17619545 tgtacctgtgggttagtgccaacataaa---agttttctaccaccttcggattagtaatatctgaattaggtagaataatcaagaaattagcattattga 17619449  T
Q  123 tcctccattcatattggtaattgtgagtagggtcatg 159  Q
      ||||| ||||||||| ||||||||| |||| ||||    
T  17619448 ctctccactcatattggaaattgtgagaagggccatg 17619412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0485 (Bit Score: 176; Significance: 7e-95; HSPs: 1)
Name: scaffold0485
Description:

Target: scaffold0485; HSP #1
Raw Score: 176; E-Value: 7e-95
Query Start/End: Original strand, 22 - 276
Target Start/End: Original strand, 11313 - 11568
Alignment:
Q  22 ttgtacctgtgggttagtaccaacataaagcaaatttt-ccaccacctccggattagtaatgtccgaattaggtagaataatcaaacaattagttctaat 120  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||| ||||||| |||||||||||||||||||||||||| ||||||    
T  11313 ttgtacctgtgggttagtaccaacataaagcaaatttttccaccacctccagattagttatgtccggattaggtagaataatcaaacaattagctctaat 11412  T
Q  121 aatcctccattcatattggtaattgtgagtagggtcatgggttctaaggaaggacaaagtagtgagagtatataagtttggataataattttcctctatc 220  Q
    ||| ||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||| | ||||||| ||  ||||||||    
T  11413 aattctccactcatattggtaattgtgagtatggtcatgggttctaaggaaggacaaagtagtgagattatataagtctagataatagttcccctctatc 11512  T
Q  221 ctcttgatcccttgattcacactcaccctaaacctcttagcaataaaagtgatgat 276  Q
    |||||||||||||||||||||||||||| |||| |  |||||||||| ||||||||    
T  11513 ctcttgatcccttgattcacactcaccccaaactttctagcaataaaggtgatgat 11568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 176; Significance: 7e-95; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 176; E-Value: 7e-95
Query Start/End: Original strand, 22 - 276
Target Start/End: Complemental strand, 27045672 - 27045424
Alignment:
Q  22 ttgtacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtccgaattaggtagaataatcaaacaattagttctaata 121  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||     
T  27045672 ttgtacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtccgaattaggtagaataatcaaacaattagctctaatg 27045573  T
Q  122 atcctccattcatattggtaattgtgagtagggtcatgggttctaaggaaggacaaagtagtgagagtatataagtttggataataattttcctctatcc 221  Q
    || |||||| |||||||||||||||||||||||||||||||| ||||||| ||||||||      |||||| |||||| ||||||| || || |||||||    
T  27045572 attctccatgcatattggtaattgtgagtagggtcatgggttttaaggaatgacaaagt------agtataaaagtttagataatagttctcatctatcc 27045479  T
Q  222 tcttgatcccttgattcacactcaccctaaacctcttagcaataaaagtgatgat 276  Q
    |||||||||||||||||| |||||||| |||| ||||||||||||||||||||||    
T  27045478 tcttgatcccttgattcatactcaccccaaacttcttagcaataaaagtgatgat 27045424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 56 - 168
Target Start/End: Original strand, 22626469 - 22626580
Alignment:
Q  56 ttttccaccacctccggattagtaatgtccgaattaggtagaataatcaaacaattagttctaataatcctccattcatattggtaattgtgagtagggt 155  Q
    ||||| |||||| ||||||||||||| ||||||||||||||||||||||| |||||||   || | |  ||||| ||||||||||||||||||| ||||     
T  22626469 ttttctaccaccaccggattagtaatatccgaattaggtagaataatcaagcaattagcattattgactctccactcatattggtaattgtgagaaggg- 22626567  T
Q  156 catgggttctaag 168  Q
    ||||| |||||||    
T  22626568 catggattctaag 22626580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 23 - 105
Target Start/End: Original strand, 21785853 - 21785932
Alignment:
Q  23 tgtacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtccgaattaggtagaataatcaa 105  Q
    ||||||||||||||||| ||||||||||   | ||||| ||||||| |||||||||||| || ||||||||||||| ||||||    
T  21785853 tgtacctgtgggttagtgccaacataaa---agttttctaccaccttcggattagtaatatctgaattaggtagaaaaatcaa 21785932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 164; Significance: 1e-87; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 22 - 276
Target Start/End: Original strand, 22062920 - 22063168
Alignment:
Q  22 ttgtacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtccgaattaggtagaataatcaaacaattagttctaata 121  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||     
T  22062920 ttgtacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtccgaattaggtagaataatcaaacaattagctctaatg 22063019  T
Q  122 atcctccattcatattggtaattgtgagtagggtcatgggttctaaggaaggacaaagtagtgagagtatataagtttggataataattttcctctatcc 221  Q
    || |||||| ||| ||||||||||||||||| ||||||| || ||||||| ||||||||      |||||| |||||| ||||||| || || |||||||    
T  22063020 attctccatgcatgttggtaattgtgagtagagtcatggtttttaaggaatgacaaagt------agtataaaagtttagataatagttctcatctatcc 22063113  T
Q  222 tcttgatcccttgattcacactcaccctaaacctcttagcaataaaagtgatgat 276  Q
    |||||||||||||||||| |||||||| |||| ||||||||||||||||||||||    
T  22063114 tcttgatcccttgattcatactcaccccaaacttcttagcaataaaagtgatgat 22063168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 22 - 276
Target Start/End: Original strand, 19586983 - 19587222
Alignment:
Q  22 ttgtacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtccgaattaggtagaataatcaaacaattagttctaata 121  Q
    |||||||||||||||| |||||||||||| ||||||||||||||||||| |||||               |||||||||||||||||||||| |||||||    
T  19586983 ttgtacctgtgggttaataccaacataaatcaaattttccaccacctccagatta---------------ggtagaataatcaaacaattagctctaata 19587067  T
Q  122 atcctccattcatattggtaattgtgagtagggtcatgggttctaaggaaggacaaagtagtgagagtatataagtttggataataattttcctctatcc 221  Q
    || |||| || |||||||||||||| ||||||  |||||||||||||||||||||||||||||||||||||||||| | ||||||| ||   ||||||||    
T  19587068 attctccgtttatattggtaattgtaagtaggtccatgggttctaaggaaggacaaagtagtgagagtatataagtgtagataatagttcctctctatcc 19587167  T
Q  222 tcttgatcccttgattcacactcaccctaaacctcttagcaataaaagtgatgat 276  Q
    |||||||||||||||||| |||||||| |||| || |||||||||| ||||||||    
T  19587168 tcttgatcccttgattcagactcaccccaaacttcctagcaataaaggtgatgat 19587222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 23 - 276
Target Start/End: Original strand, 23519161 - 23519414
Alignment:
Q  23 tgtacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtccgaattaggtagaataatcaaacaattagttctaataa 122  Q
    |||||| |||||||||| ||||||||||||||||||||||||| |||||||||||| |||||| ||| |||||||||||||||||||||||  ||| | |    
T  23519161 tgtacccgtgggttagttccaacataaagcaaattttccaccatctccggattagttatgtccaaataaggtagaataatcaaacaattagccctattta 23519260  T
Q  123 tcctccattcatattggtaattgtgagtagggtcatgggttctaaggaaggacaaagtagtgagagtatataagtttggataataattttcctctatcct 222  Q
       |||   |||||||||| ||||||| ||||||||||||| ||||||| ||||  ||| |||| |||| ||||| | ||||||| ||  |||| |||||    
T  23519261 ctttccgcacatattggtagttgtgagaagggtcatgggttataaggaaagacatggtattgagggtatctaagtctagataatagttcccctcaatcct 23519360  T
Q  223 cttgatcccttgattcacactcaccctaaacctcttagcaataaaagtgatgat 276  Q
     |||| ||| |   ||| | |||| |||||| || ||||||| || ||||||||    
T  23519361 attgacccccttgctcatattcactctaaacttcctagcaatgaaggtgatgat 23519414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 23 - 167
Target Start/End: Original strand, 18188979 - 18189123
Alignment:
Q  23 tgtacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtccgaattaggtagaataatcaaacaattagttctaataa 122  Q
    ||||||||||||||||| |||||||||| ||| ||||| |||||||||||||||||| | ||||||||||||||||||||||| |||||||   || | |    
T  18188979 tgtacctgtgggttagtgccaacataaaccaagttttctaccacctccggattagtattatccgaattaggtagaataatcaagcaattagcattattga 18189078  T
Q  123 tcctccattcatattggtaattgtgagtagggtcatgggttctaa 167  Q
      ||||| ||||||||||||||||||| |||||||||| ||||||    
T  18189079 ctctccactcatattggtaattgtgagaagggtcatggattctaa 18189123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 23 - 149
Target Start/End: Complemental strand, 17818320 - 17818194
Alignment:
Q  23 tgtacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtccgaattaggtagaataatcaaacaattagttctaataa 122  Q
    ||||||||||||||||| |||||||||| ||| ||||| ||||||| |||||||||||| || ||||||||||||||||||||  ||||||   || | |    
T  17818320 tgtacctgtgggttagtgccaacataaaccaagttttctaccacctacggattagtaatatctgaattaggtagaataatcaagaaattagcattattga 17818221  T
Q  123 tcctccattcatattggtaattgtgag 149  Q
      ||||| |||||||||||||||||||    
T  17818220 ctctccactcatattggtaattgtgag 17818194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 22 - 105
Target Start/End: Complemental strand, 18852822 - 18852742
Alignment:
Q  22 ttgtacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtccgaattaggtagaataatcaa 105  Q
    |||||||||||||||||| ||||||||||   ||||||| |||| ||||||||||||||| || ||||||||||||||||||||    
T  18852822 ttgtacctgtgggttagtgccaacataaa---aattttctaccatctccggattagtaatatctgaattaggtagaataatcaa 18852742  T

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Target: chr6; HSP #7
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 22 - 67
Target Start/End: Complemental strand, 29685338 - 29685293
Alignment:
Q  22 ttgtacctgtgggttagtaccaacataaagcaaattttccaccacc 67  Q
    |||||||||||||||||||| |||||||||||||||||||||||||    
T  29685338 ttgtacctgtgggttagtactaacataaagcaaattttccaccacc 29685293  T

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Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 23 - 64
Target Start/End: Original strand, 24390285 - 24390326
Alignment:
Q  23 tgtacctgtgggttagtaccaacataaagcaaattttccacc 64  Q
    |||||||||  |||||||||| ||||||||||||||||||||    
T  24390285 tgtacctgtttgttagtaccagcataaagcaaattttccacc 24390326  T

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Target: chr2 (Bit Score: 90; Significance: 2e-43; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 23 - 276
Target Start/End: Original strand, 25339516 - 25339769
Alignment:
Q  23 tgtacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtccgaattaggtagaataatcaaacaattagttctaataa 122  Q
    ||||| |||| |||||| ||||||||||| |||||||||||||||||| ||||||| ||||||| ||||||||||||||||||||||||||  ||| | |    
T  25339516 tgtacatgtgagttagtgccaacataaagaaaattttccaccacctccagattagttatgtccggattaggtagaataatcaaacaattagccctattga 25339615  T
Q  123 tcctccattcatattggtaattgtgagtagggtcatgggttctaaggaaggacaaagtagtgagagtatataagtttggataataattttcctctatcct 222  Q
     | |||| |||||||||||||||||||| ||| |||| |||||||| ||||||| ||| ||||| |||| ||||| |  |  ||  ||  ||||||||||    
T  25339616 ccttccactcatattggtaattgtgagttgggccatgagttctaagaaaggacatagtggtgagggtatctaagtctaaactattgttcccctctatcct 25339715  T
Q  223 cttgatcccttgattcacactcaccctaaacctcttagcaataaaagtgatgat 276  Q
     |||||||||| | ||||||| || | |||| || ||||||| || ||||||||    
T  25339716 attgatccctttactcacacttactccaaacttcctagcaatgaaggtgatgat 25339769  T

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Target: chr2; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 23 - 233
Target Start/End: Complemental strand, 24501134 - 24500924
Alignment:
Q  23 tgtacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtccgaattaggtagaataatcaaacaattagttctaataa 122  Q
    ||||||||||||||||| |||||||||| ||| ||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||   || | |    
T  24501134 tgtacctgtgggttagtgccaacataaatcaagttttctaccacctccggattagtaatgtccgaattaggtagaataatcaagcaattagcattattga 24501035  T
Q  123 tcctccattcatattggtaattgtgagtagggtcatgggttctaaggaaggacaaagtagtgagagtatataagtttggataataattttcctctatcct 222  Q
      ||||| | ||||||||||||||||| |||| ||||| ||||||| ||  |||  |||||||| || | ||||| | |||| || ||| |||| |||||    
T  24501034 ctctccactaatattggtaattgtgagaagggccatggattctaagaaaaaacatggtagtgagggtttctaagtctagatagtagtttccctcaatcct 24500935  T
Q  223 cttgatccctt 233  Q
     ||||||||||    
T  24500934 attgatccctt 24500924  T

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Target: scaffold0220 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: scaffold0220
Description:

Target: scaffold0220; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 41 - 167
Target Start/End: Original strand, 11741 - 11867
Alignment:
Q  41 ccaacataaagcaaattttccaccacctccggattagtaatgtccgaattaggtagaataatcaaacaattagttctaataatcctccattcatattggt 140  Q
    |||||||||| ||| ||||| ||||||||| |||||||||| ||||||||||||||||||||||| |||||||   || | |  ||||| ||||||||||    
T  11741 ccaacataaaccaagttttctaccacctccagattagtaatatccgaattaggtagaataatcaagcaattagcattattgactctccactcatattggt 11840  T
Q  141 aattgtgagtagggtcatgggttctaa 167  Q
    ||||||||| |||||||||| ||||||    
T  11841 aattgtgagaagggtcatggattctaa 11867  T

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Target: scaffold0222 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: scaffold0222
Description:

Target: scaffold0222; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 23 - 167
Target Start/End: Complemental strand, 18632 - 18488
Alignment:
Q  23 tgtacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtccgaattaggtagaataatcaaacaattagttctaataa 122  Q
    ||||||||||||||||| |||||||||| ||| ||||| |||||||||||||||||||| || ||||||||||||||||||||  ||||||   || | |    
T  18632 tgtacctgtgggttagtgccaacataaaccaagttttctaccacctccggattagtaatatctgaattaggtagaataatcaagaaattagcattattga 18533  T
Q  123 tcctccattcatattggtaattgtgagtagggtcatgggttctaa 167  Q
      ||||| |||||||||||||||| |  |||| ||| ||||||||    
T  18532 ctctccactcatattggtaattgttataagggccatcggttctaa 18488  T

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Target: scaffold0566 (Bit Score: 57; Significance: 7e-24; HSPs: 1)
Name: scaffold0566
Description:

Target: scaffold0566; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 23 - 159
Target Start/End: Complemental strand, 1411 - 1275
Alignment:
Q  23 tgtacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtccgaattaggtagaataatcaaacaattagttctaataa 122  Q
    ||||||||||||||||| |||||||||| ||| ||||| ||||||||| |||||||||| || ||||||||||||||||||||  ||||||    | | |    
T  1411 tgtacctgtgggttagtgccaacataaaccaagttttctaccacctccagattagtaatatctgaattaggtagaataatcaagaaattagcataattga 1312  T
Q  123 tcctccattcatattggtaattgtgagtagggtcatg 159  Q
      ||||| |||||||||||||||| || |||||||||    
T  1311 ctctccactcatattggtaattgttagaagggtcatg 1275  T

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Target: scaffold0026 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: scaffold0026
Description:

Target: scaffold0026; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 56 - 165
Target Start/End: Complemental strand, 17138 - 17029
Alignment:
Q  56 ttttccaccacctccggattagtaatgtccgaattaggtagaataatcaaacaattagttctaataatcctccattcatattggtaattgtgagtagggt 155  Q
    ||||| |||||||| | ||||||||| ||||||||||||||||||||||| |||||||   || | |  ||||| ||||||||||||||||||| |||||    
T  17138 ttttctaccacctctgtattagtaatatccgaattaggtagaataatcaagcaattagcattattgactctccactcatattggtaattgtgagaagggt 17039  T
Q  156 catgggttct 165  Q
    ||||| ||||    
T  17038 catggattct 17029  T

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Target: scaffold0113 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0113
Description:

Target: scaffold0113; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 23 - 167
Target Start/End: Original strand, 38043 - 38184
Alignment:
Q  23 tgtacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtccgaattaggtagaataatcaaacaattagttctaataa 122  Q
    ||||||||||||||||| ||||||||||   | ||||| |||||||  | ||||||||| || ||||||||||||||||||||  ||||||   || | |    
T  38043 tgtacctgtgggttagtgccaacataaa---agttttctaccaccttagaattagtaatatctgaattaggtagaataatcaagaaattagcattattga 38139  T
Q  123 tcctccattcatattggtaattgtgagtagggtcatgggttctaa 167  Q
      | ||| ||||||||| ||||||||| |||| ||||| ||||||    
T  38140 ctcgccactcatattggaaattgtgagaagggccatggattctaa 38184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1184 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold1184
Description:

Target: scaffold1184; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 30 - 64
Target Start/End: Original strand, 537 - 571
Alignment:
Q  30 gtgggttagtaccaacataaagcaaattttccacc 64  Q
    |||||||||||||||||||||||||||||||||||    
T  537 gtgggttagtaccaacataaagcaaattttccacc 571  T

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Target: scaffold0012 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 23 - 102
Target Start/End: Original strand, 12854 - 12930
Alignment:
Q  23 tgtacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtccgaattaggtagaataat 102  Q
    ||||||||||||||||| |||||||||   || ||||| ||||||||| |||||||||| ||  | ||||||||||||||    
T  12854 tgtacctgtgggttagtgccaacataa---aagttttctaccacctccagattagtaatatctaatttaggtagaataat 12930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 23 - 102
Target Start/End: Original strand, 8745 - 8821
Alignment:
Q  23 tgtacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtccgaattaggtagaataat 102  Q
    ||||| ||||||||||| ||||||||||   | ||||| ||||||||| |||||||||| ||  | ||||||||||||||    
T  8745 tgtacatgtgggttagtgccaacataaa---agttttctaccacctccagattagtaatatctaatttaggtagaataat 8821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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