View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19802_low_7 (Length: 281)
Name: NF19802_low_7
Description: NF19802
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19802_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 198; Significance: 1e-108; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 218
Target Start/End: Complemental strand, 11020991 - 11020774
Alignment:
| Q |
1 |
gcctatgtataccacaattcaatccagttagacactttacggatattgctgattttctctct--ttttctaaatttgctaatagttggttttatgcatgt |
98 |
Q |
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| T |
11020991 |
gcctatgtataccacaattcaatccagttagacactttacggatattgctgattttctctctctttttctaaatttgctaatagttggttttatgcatgt |
11020892 |
T |
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| Q |
99 |
gttaagacacagtcgactcatgttgtcttctttttgaatggaatggacattttcttttgtgtgaactaaaatattctatgcgagcaactgtagagattag |
198 |
Q |
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| T |
11020891 |
gttaagacacagtcgactcatgttgtcttctttttgaatggaatggacattt--ttttgtgtgaactaaaatattctatgcgagcaactgtagagattag |
11020794 |
T |
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| Q |
199 |
tttaatgagcagtaaaacca |
218 |
Q |
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|||||||||||||||||||| |
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| T |
11020793 |
tttaatgagcagtaaaacca |
11020774 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 86 - 218
Target Start/End: Complemental strand, 11036921 - 11036788
Alignment:
| Q |
86 |
gttttatgcatgtgttaagacacagtcgactcatgttgtcttctttttgaatggaatggaca--ttttcttttgtgtgaactaaaatattctatgcgagc |
183 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||| |||| ||| |||||| || ||||||||||||||||| |
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| T |
11036921 |
gttttatgcatgtattaagacacagtcgactcatgttgtcttcttttggaatggaatggacatgttttttttggtgtgatct-aaatattctatgcgagc |
11036823 |
T |
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| Q |
184 |
aactgtagagattagtttaatgagcagtaaaacca |
218 |
Q |
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| T |
11036822 |
aactgtagagattagtttaaggagtagtaaaacca |
11036788 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 216 - 270
Target Start/End: Complemental strand, 11020670 - 11020616
Alignment:
| Q |
216 |
ccaaaatcacaattgtccaactatttatccagtcttgttaaggaacaaagtgatg |
270 |
Q |
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| T |
11020670 |
ccaaaatcacaattgtccaactatttatccagtcttgttaaggaacaaagtgatg |
11020616 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 219 - 270
Target Start/End: Complemental strand, 11027504 - 11027452
Alignment:
| Q |
219 |
aaatcacaattgtccaa-ctatttatccagtcttgttaaggaacaaagtgatg |
270 |
Q |
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||||||||||||||| | ||||||||| ||||||||||||||||||||||||| |
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| T |
11027504 |
aaatcacaattgtcccatctatttatcgagtcttgttaaggaacaaagtgatg |
11027452 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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