View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19802_low_8 (Length: 278)

Name: NF19802_low_8
Description: NF19802
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19802_low_8
NF19802_low_8
[»] chr5 (36 HSPs)
chr5 (1-268)||(30072044-30072311)
chr5 (94-193)||(24517295-24517394)
chr5 (94-179)||(12340089-12340173)
chr5 (1-89)||(11274249-11274337)
chr5 (94-178)||(17382110-17382194)
chr5 (1-89)||(25594611-25594699)
chr5 (94-178)||(25594767-25594851)
chr5 (8-89)||(26329995-26330074)
chr5 (94-178)||(17027483-17027567)
chr5 (125-211)||(22229731-22229818)
chr5 (1-59)||(18452731-18452789)
chr5 (8-69)||(17027655-17027716)
chr5 (5-94)||(26070577-26070665)
chr5 (7-79)||(16622601-16622673)
chr5 (94-178)||(24841709-24841793)
chr5 (1-86)||(17381963-17382048)
chr5 (3-96)||(22229905-22229997)
chr5 (8-89)||(24841861-24841942)
chr5 (94-178)||(18222449-18222533)
chr5 (94-201)||(22967917-22968025)
chr5 (94-203)||(15205575-15205683)
chr5 (94-179)||(16622742-16622826)
chr5 (110-179)||(25075328-25075397)
chr5 (110-179)||(25133297-25133366)
chr5 (1-89)||(16634154-16634242)
chr5 (124-179)||(22754903-22754958)
chr5 (96-199)||(26070409-26070512)
chr5 (2-80)||(18178217-18178296)
chr5 (95-157)||(23157864-23157926)
chr5 (1-75)||(24410849-24410923)
chr5 (94-144)||(25680586-25680636)
chr5 (1-69)||(7742789-7742857)
chr5 (99-167)||(11274411-11274479)
chr5 (1-69)||(24517473-24517541)
chr5 (25-89)||(25075255-25075319)
chr5 (25-89)||(25133224-25133288)
[»] chr1 (40 HSPs)
chr1 (1-87)||(11769913-11769999)
chr1 (94-178)||(23223367-23223451)
chr1 (1-89)||(25727828-25727916)
chr1 (1-89)||(25736236-25736324)
chr1 (94-201)||(12423989-12424097)
chr1 (1-89)||(25730490-25730578)
chr1 (94-204)||(50047110-50047221)
chr1 (94-201)||(8247732-8247840)
chr1 (94-172)||(12810284-12810362)
chr1 (1-79)||(25494408-25494485)
chr1 (96-178)||(26657432-26657514)
chr1 (94-178)||(30675439-30675524)
chr1 (104-179)||(21451900-21451976)
chr1 (94-157)||(24903370-24903433)
chr1 (96-178)||(18301080-18301164)
chr1 (97-178)||(25730649-25730729)
chr1 (94-178)||(11770069-11770153)
chr1 (111-190)||(30781703-30781783)
chr1 (12-67)||(18300933-18300988)
chr1 (1-84)||(23519688-23519770)
chr1 (1-68)||(34381839-34381906)
chr1 (9-79)||(23223530-23223600)
chr1 (1-58)||(26102195-26102252)
chr1 (16-89)||(26657584-26657657)
chr1 (25-89)||(8247600-8247664)
chr1 (94-192)||(18795122-18795221)
chr1 (28-79)||(23521675-23521726)
chr1 (1-47)||(18795330-18795376)
chr1 (104-178)||(25266430-25266503)
chr1 (94-167)||(23519830-23519903)
chr1 (1-54)||(27461100-27461153)
chr1 (94-171)||(34381671-34381748)
chr1 (1-68)||(15416892-15416960)
chr1 (94-170)||(18391046-18391122)
chr1 (3-47)||(19257725-19257769)
chr1 (94-138)||(25494554-25494598)
chr1 (1-69)||(26854239-26854307)
chr1 (9-89)||(30675592-30675672)
chr1 (25-89)||(30781868-30781932)
chr1 (1-69)||(31313679-31313747)
[»] chr2 (30 HSPs)
chr2 (97-201)||(21505217-21505322)
chr2 (94-202)||(25473968-25474077)
chr2 (1-89)||(27417182-27417270)
chr2 (94-201)||(35707735-35707843)
chr2 (7-89)||(24188077-24188159)
chr2 (93-178)||(32619598-32619683)
chr2 (1-89)||(21505058-21505146)
chr2 (94-157)||(16593827-16593890)
chr2 (8-94)||(18236229-18236314)
chr2 (94-155)||(30998750-30998811)
chr2 (1-69)||(1732678-1732746)
chr2 (1-89)||(22511053-22511141)
chr2 (94-178)||(28278498-28278581)
chr2 (93-171)||(1733063-1733141)
chr2 (7-79)||(15829239-15829310)
chr2 (93-202)||(18236376-18236486)
chr2 (94-156)||(21844704-21844766)
chr2 (1-47)||(24047531-24047577)
chr2 (15-69)||(27917916-27917970)
chr2 (1-89)||(19541145-19541232)
chr2 (94-189)||(19949629-19949725)
chr2 (94-201)||(32276588-32276696)
chr2 (131-178)||(31914045-31914092)
chr2 (1-47)||(15454458-15454504)
chr2 (94-156)||(21843077-21843139)
chr2 (95-132)||(15829136-15829173)
chr2 (20-89)||(21849012-21849080)
chr2 (1-69)||(14921958-14922026)
chr2 (9-89)||(17415090-17415169)
chr2 (25-89)||(35707911-35707975)
[»] chr8 (31 HSPs)
chr8 (96-190)||(12956432-12956527)
chr8 (94-172)||(14977182-14977260)
chr8 (100-201)||(16052358-16052460)
chr8 (96-178)||(24120187-24120269)
chr8 (94-201)||(13082012-13082120)
chr8 (1-89)||(16052196-16052284)
chr8 (94-201)||(16054226-16054334)
chr8 (94-178)||(28901415-28901499)
chr8 (1-89)||(32239395-32239483)
chr8 (94-178)||(32239243-32239327)
chr8 (7-69)||(24696709-24696771)
chr8 (104-201)||(29047401-29047499)
chr8 (9-92)||(22894458-22894540)
chr8 (101-174)||(6358658-6358731)
chr8 (1-79)||(14977028-14977108)
chr8 (1-89)||(28859158-28859246)
chr8 (9-79)||(28901276-28901346)
chr8 (2-67)||(12956610-12956675)
chr8 (7-92)||(24584650-24584734)
chr8 (1-94)||(29291873-29291965)
chr8 (97-176)||(26882365-26882445)
chr8 (4-80)||(28074629-28074705)
chr8 (1-69)||(30543888-30543956)
chr8 (94-157)||(5570216-5570279)
chr8 (19-94)||(28902192-28902267)
chr8 (1-67)||(28292020-28292086)
chr8 (1-69)||(5153885-5153953)
chr8 (94-174)||(13530180-13530260)
chr8 (94-174)||(13619719-13619799)
chr8 (25-89)||(29047262-29047326)
chr8 (3-35)||(30851021-30851053)
[»] chr7 (32 HSPs)
chr7 (8-79)||(7494814-7494885)
chr7 (1-94)||(29544622-29544715)
chr7 (9-89)||(7142206-7142286)
chr7 (94-178)||(29544475-29544559)
chr7 (94-179)||(22067881-22067967)
chr7 (94-178)||(20470885-20470969)
chr7 (102-201)||(20446171-20446271)
chr7 (8-68)||(9761341-9761401)
chr7 (1-89)||(23125008-23125096)
chr7 (94-178)||(7142054-7142138)
chr7 (102-189)||(7815267-7815355)
chr7 (8-75)||(4977746-4977813)
chr7 (100-189)||(315129-315219)
chr7 (96-146)||(1255290-1255340)
chr7 (94-172)||(23124863-23124940)
chr7 (8-68)||(9801800-9801860)
chr7 (1-89)||(20470729-20470817)
chr7 (106-201)||(21471729-21471825)
chr7 (1-44)||(21545746-21545789)
chr7 (4-89)||(1255135-1255220)
chr7 (7-80)||(20461573-20461646)
chr7 (7-75)||(9755915-9755983)
chr7 (7-75)||(9800711-9800779)
chr7 (130-178)||(19140085-19140133)
chr7 (130-178)||(20739484-20739532)
chr7 (94-178)||(21545874-21545957)
chr7 (9-80)||(3268893-3268964)
chr7 (3-69)||(3487287-3487353)
chr7 (1-47)||(46054845-46054891)
chr7 (94-178)||(7494667-7494751)
chr7 (95-159)||(9385463-9385527)
chr7 (93-157)||(46054675-46054739)
[»] chr3 (34 HSPs)
chr3 (94-172)||(33914637-33914715)
chr3 (1-89)||(19219130-19219218)
chr3 (94-201)||(25919539-25919647)
chr3 (96-179)||(1475357-1475441)
chr3 (3-79)||(25919392-25919468)
chr3 (9-89)||(33914494-33914574)
chr3 (97-202)||(19219289-19219395)
chr3 (96-179)||(12573244-12573328)
chr3 (96-179)||(13549708-13549792)
chr3 (1-84)||(19263826-19263909)
chr3 (7-85)||(16970573-16970651)
chr3 (94-171)||(21017840-21017917)
chr3 (1-89)||(11474954-11475042)
chr3 (1-89)||(28422560-28422648)
chr3 (93-167)||(10341763-10341836)
chr3 (94-172)||(13911227-13911305)
chr3 (1-47)||(21829052-21829098)
chr3 (6-80)||(26418836-26418910)
chr3 (90-167)||(10303427-10303504)
chr3 (93-153)||(8402624-8402684)
chr3 (1-89)||(21017985-21018072)
chr3 (94-157)||(11521117-11521180)
chr3 (94-203)||(25883033-25883143)
chr3 (106-202)||(17637034-17637131)
chr3 (20-89)||(27415276-27415345)
chr3 (94-134)||(2729693-2729733)
chr3 (1-69)||(23908190-23908258)
chr3 (25-79)||(18065914-18065968)
chr3 (1-47)||(26387764-26387810)
chr3 (28-89)||(2729564-2729625)
chr3 (34-79)||(5632494-5632539)
chr3 (94-179)||(12409413-12409498)
chr3 (96-200)||(25188691-25188796)
chr3 (7-67)||(8402477-8402537)
[»] chr4 (37 HSPs)
chr4 (8-89)||(34864221-34864302)
chr4 (94-180)||(5906795-5906881)
chr4 (95-171)||(34864367-34864443)
chr4 (8-79)||(47024691-47024762)
chr4 (1-89)||(15192311-15192398)
chr4 (94-171)||(12111407-12111482)
chr4 (94-178)||(1676370-1676454)
chr4 (94-178)||(1682898-1682982)
chr4 (94-205)||(25315306-25315418)
chr4 (94-200)||(9783058-9783165)
chr4 (8-79)||(18898100-18898171)
chr4 (102-178)||(1696652-1696726)
chr4 (93-193)||(22119586-22119687)
chr4 (16-89)||(25315165-25315238)
chr4 (94-178)||(18897947-18898031)
chr4 (1-80)||(9288326-9288405)
chr4 (2-89)||(23353730-23353815)
chr4 (95-178)||(25050141-25050224)
chr4 (1-47)||(7024138-7024184)
chr4 (94-162)||(4953654-4953722)
chr4 (25-89)||(17026639-17026703)
chr4 (9-67)||(5676329-5676387)
chr4 (125-171)||(15192166-15192212)
chr4 (8-89)||(12111253-12111332)
chr4 (7-92)||(19601903-19601988)
chr4 (109-157)||(5125581-5125629)
chr4 (1-69)||(13064553-13064621)
chr4 (1-69)||(29437598-29437666)
chr4 (3-43)||(51884756-51884795)
chr4 (94-157)||(27302755-27302818)
chr4 (1-47)||(46647344-46647390)
chr4 (9-53)||(1695773-1695817)
chr4 (21-85)||(9782922-9782986)
chr4 (4-59)||(17339736-17339792)
chr4 (1-73)||(18444373-18444445)
chr4 (1-89)||(31859820-31859907)
chr4 (94-178)||(31859955-31860039)
[»] scaffold0171 (3 HSPs)
scaffold0171 (94-178)||(6152-6236)
scaffold0171 (1-89)||(21505-21593)
scaffold0171 (1-68)||(6324-6390)
[»] chr6 (16 HSPs)
chr6 (94-201)||(15574857-15574964)
chr6 (111-178)||(15576254-15576321)
chr6 (100-199)||(30355260-30355360)
chr6 (94-157)||(13759526-13759589)
chr6 (93-174)||(14924491-14924572)
chr6 (7-89)||(24507367-24507449)
chr6 (1-89)||(16439566-16439653)
chr6 (99-178)||(16527852-16527925)
chr6 (2-58)||(30355455-30355511)
chr6 (96-171)||(16387325-16387400)
chr6 (1-75)||(33638424-33638498)
chr6 (1-69)||(12972304-12972372)
chr6 (94-157)||(32930547-32930610)
chr6 (96-200)||(15998444-15998549)
chr6 (106-178)||(12972471-12972543)
chr6 (94-174)||(20495868-20495948)
[»] scaffold0065 (1 HSPs)
scaffold0065 (7-89)||(12352-12434)
[»] scaffold0386 (4 HSPs)
scaffold0386 (25-89)||(13014-13078)
scaffold0386 (97-201)||(8787-8892)
scaffold0386 (25-89)||(8652-8716)
scaffold0386 (101-171)||(13153-13223)
[»] scaffold0650 (1 HSPs)
scaffold0650 (9-78)||(5696-5765)
[»] scaffold0337 (1 HSPs)
scaffold0337 (7-89)||(1916-1998)
[»] scaffold0002 (1 HSPs)
scaffold0002 (125-202)||(446936-447014)
[»] scaffold0188 (1 HSPs)
scaffold0188 (97-174)||(27032-27109)
[»] scaffold0011 (1 HSPs)
scaffold0011 (27-75)||(228131-228179)


Alignment Details
Target: chr5 (Bit Score: 244; Significance: 1e-135; HSPs: 36)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 1 - 268
Target Start/End: Complemental strand, 30072311 - 30072044
Alignment:
Q  1 cattgatcttcaatcttcatatctttgatccttcatgtgatgtcttgatttttcgattaacatgatttcccactacaaagcactcaaaatacttgttcct 100  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||| || |||||||    
T  30072311 cattaatcttcaatcttcatatctttgatccttcatgtgatgtcttgatttgtcgattaatatgatttcccactacaaagcactcaaaacacctgttcct 30072212  T
Q  101 caaaccattgacaactcctataattctcatcttatttgtcttcaaatccaaagaaaagtacttaaaacatagccaaaataacacatgatgttccgtcatc 200  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30072211 caaaccattgacaactcctctaattctcatcttatttgtcttcaaatccaaagaaaagtacttaaaacatagccaaaataacacatgatgttccgtcatc 30072112  T
Q  201 aatatgcaaggtggaggtttgtagttatcgatttagaggaagatgtaaaatgacatggtaagaataat 268  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30072111 aatatgcaaggtggaggtttgtagttatcgatttagaggaagatgtaaaatgacatggtaagaataat 30072044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 94 - 193
Target Start/End: Complemental strand, 24517394 - 24517295
Alignment:
Q  94 tgttcctcaaaccattgacaactcctataattctcatcttatttgtcttcaaatccaaagaaaagtacttaaaacatagccaaaataacacatgatgttc 193  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||| |||| ||| |||||||| | |||||| ||| | ||||||    
T  24517394 tgttcctcaaaccattgacaactcctctaattctcatcttatttgtcttcaaatgcaaagcaaagaactaaaaacataactaaaatatcacttaatgttc 24517295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 94 - 179
Target Start/End: Original strand, 12340089 - 12340173
Alignment:
Q  94 tgttcctcaaaccattgacaactcctataattctcatcttatttgtcttcaaatccaaagaaaagtacttaaaacatagccaaaat 179  Q
    |||||||||||||||||||||||||| ||| ||||| ||||||||||||||||| ||||||||| |||| ||||||||||||||||    
T  12340089 tgttcctcaaaccattgacaactcctctaactctcaccttatttgtcttcaaatgcaaagaaaa-tactaaaaacatagccaaaat 12340173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 11274249 - 11274337
Alignment:
Q  1 cattgatcttcaatcttcatatctttgatccttcatgtgatgtcttgatttttcgattaacatgatttcccactacaaagcactcaaaa 89  Q
    ||||| ||||||||||||||||| ||||||||||||||||||||||||||| |||||  ||||||||||  |||||||| |||||||||    
T  11274249 cattggtcttcaatcttcatatccttgatccttcatgtgatgtcttgatttgtcgatatacatgatttcttactacaaaacactcaaaa 11274337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 94 - 178
Target Start/End: Original strand, 17382110 - 17382194
Alignment:
Q  94 tgttcctcaaaccattgacaactcctataattctcatcttatttgtcttcaaatccaaagaaaagtacttaaaacatagccaaaa 178  Q
    |||||||||||||||||||||||||| ||| ||||||||||||||||||||||| |||| ||||||||| || ||||||| ||||    
T  17382110 tgttcctcaaaccattgacaactcctctaactctcatcttatttgtcttcaaatgcaaaaaaaagtactaaacacatagcaaaaa 17382194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 25594611 - 25594699
Alignment:
Q  1 cattgatcttcaatcttcatatctttgatccttcatgtgatgtcttgatttttcgattaacatgatttcccactacaaagcactcaaaa 89  Q
    ||||||| ||||||||||||||| |||||| ||||||||||||||| ||||||||||| |||||||||| ||||| ||| |||||||||    
T  25594611 cattgatattcaatcttcatatccttgatcgttcatgtgatgtcttaatttttcgatttacatgatttctcactataaaacactcaaaa 25594699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 94 - 178
Target Start/End: Original strand, 25594767 - 25594851
Alignment:
Q  94 tgttcctcaaaccattgacaactcctataattctcatcttatttgtcttcaaatccaaagaaaagtacttaaaacatagccaaaa 178  Q
    |||||||||||||||||| || |||| ||| ||||||||||||||||||||||| |||| ||||||||| |||||||||||||||    
T  25594767 tgttcctcaaaccattgagaaatcctctaactctcatcttatttgtcttcaaatgcaaataaaagtactaaaaacatagccaaaa 25594851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 8 - 89
Target Start/End: Original strand, 26329995 - 26330074
Alignment:
Q  8 cttcaatcttcatatctttgatccttcatgtgatgtcttgatttttcgattaacatgatttcccactacaaagcactcaaaa 89  Q
    |||||||||||||||| |||||||||||||||||||||||||||||| ||| |||||||||  ||||||||| |||||||||    
T  26329995 cttcaatcttcatatccttgatccttcatgtgatgtcttgatttttcaatttacatgattt--cactacaaaacactcaaaa 26330074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 94 - 178
Target Start/End: Complemental strand, 17027567 - 17027483
Alignment:
Q  94 tgttcctcaaaccattgacaactcctataattctcatcttatttgtcttcaaatccaaagaaaagtacttaaaacatagccaaaa 178  Q
    ||||||||||||| ||||| || ||| ||| |||||||||| ||||||| |||| |||||||||||||| |||||||||||||||    
T  17027567 tgttcctcaaacccttgaccacgcctctaactctcatcttaattgtctttaaatgcaaagaaaagtactaaaaacatagccaaaa 17027483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 125 - 211
Target Start/End: Complemental strand, 22229818 - 22229731
Alignment:
Q  125 tctcatcttatttgtcttcaaatccaaagaaaagtact-taaaacatagccaaaataacacatgatgttccgtcatcaatatgcaagg 211  Q
    ||||||||||||||||||||||| ||||||||||||||  |||||||||||||||| ||| |||||| || |||||||| || |||||    
T  22229818 tctcatcttatttgtcttcaaatgcaaagaaaagtactaaaaaacatagccaaaatgacatatgatgctctgtcatcaacatccaagg 22229731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 18452731 - 18452789
Alignment:
Q  1 cattgatcttcaatcttcatatctttgatccttcatgtgatgtcttgatttttcgatta 59  Q
    |||||||||||||| |||||||||||||||| ||||||||||||||||||| |||||||    
T  18452731 cattgatcttcaattttcatatctttgatccctcatgtgatgtcttgatttgtcgatta 18452789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 8 - 69
Target Start/End: Complemental strand, 17027716 - 17027655
Alignment:
Q  8 cttcaatcttcatatctttgatccttcatgtgatgtcttgatttttcgattaacatgatttc 69  Q
    ||||||||||||||||||||||| | || |||||||||||||||||||||| ||||||||||    
T  17027716 cttcaatcttcatatctttgatcttgcacgtgatgtcttgatttttcgatttacatgatttc 17027655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 5 - 94
Target Start/End: Complemental strand, 26070665 - 26070577
Alignment:
Q  5 gatcttcaatcttcatatctttgatccttcatgtgatgtcttgatttttcgattaacatgatttcccactacaaagcactcaaaatactt 94  Q
    ||||||||||||||||||| ||||||||||||||||||||||| |||  | ||| |||||||||| ||||| |||| |||||||| ||||    
T  26070665 gatcttcaatcttcatatccttgatccttcatgtgatgtcttgttttgccaatttacatgatttctcactaaaaag-actcaaaacactt 26070577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 7 - 79
Target Start/End: Original strand, 16622601 - 16622673
Alignment:
Q  7 tcttcaatcttcatatctttgatccttcatgtgatgtcttgatttttcgattaacatgatttcccactacaaa 79  Q
    ||||||||||||||||| || |||||||||||||||||||||||| || ||| |||||||||| |||| ||||    
T  16622601 tcttcaatcttcatatccttaatccttcatgtgatgtcttgatttgtcaatttacatgatttctcactgcaaa 16622673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 94 - 178
Target Start/End: Complemental strand, 24841793 - 24841709
Alignment:
Q  94 tgttcctcaaaccattgacaactcctataattctcatcttatttgtcttcaaatccaaagaaaagtacttaaaacatagccaaaa 178  Q
    |||||||||||||||||| ||||||| ||  ||| | ||||||||||||||||| ||||||| |||||| |||||||||| ||||    
T  24841793 tgttcctcaaaccattgaaaactcctctatctctaaacttatttgtcttcaaatgcaaagaatagtactaaaaacatagcaaaaa 24841709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 1 - 86
Target Start/End: Original strand, 17381963 - 17382048
Alignment:
Q  1 cattgatcttcaatcttcatatctttgatccttcatgtgatgtcttgatttttcgattaacatgatttcccactacaaagcactca 86  Q
    ||||| ||||||| ||||||||| |||||||||||  | ||||||||||||  ||||| |||||||||| ||||||||| ||||||    
T  17381963 cattggtcttcaaacttcatatccttgatccttcacattatgtcttgatttgacgatttacatgatttctcactacaaaacactca 17382048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 3 - 96
Target Start/End: Complemental strand, 22229997 - 22229905
Alignment:
Q  3 ttgatcttcaatcttcatatctttgatccttcatgtgatgtcttgatttttcgattaacatgatttcccactacaaagcactcaaaatacttgt 96  Q
    |||||||||||| | |||||||||||||||||| ||||||||||||||| | |||| |||||||| | |||||||||  || ||||| ||||||    
T  22229997 ttgatcttcaat-tccatatctttgatccttcacgtgatgtcttgatttgttgatttacatgattcctcactacaaaatacccaaaacacttgt 22229905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 8 - 89
Target Start/End: Complemental strand, 24841942 - 24841861
Alignment:
Q  8 cttcaatcttcatatctttgatccttcatgtgatgtcttgatttttcgattaacatgatttcccactacaaagcactcaaaa 89  Q
    ||||||||  |||||| ||||||||||| ||| |||||||||||||| ||| |||||||||| ||||||||| |||| ||||    
T  24841942 cttcaatccacatatccttgatccttcacgtgttgtcttgatttttcaatttacatgatttctcactacaaaacactaaaaa 24841861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 94 - 178
Target Start/End: Complemental strand, 18222533 - 18222449
Alignment:
Q  94 tgttcctcaaaccattgacaactcctataattctcatcttatttgtcttcaaatccaaagaaaagtacttaaaacatagccaaaa 178  Q
    |||| ||||||||||||||||||| | ||| |||||||||||||||||||||||  ||| |||| |||| |||| ||||| ||||    
T  18222533 tgtttctcaaaccattgacaactcatctaactctcatcttatttgtcttcaaatagaaataaaaatactaaaaatatagctaaaa 18222449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 94 - 201
Target Start/End: Original strand, 22967917 - 22968025
Alignment:
Q  94 tgttcctcaaaccattgacaactcctataattctcatcttatttgtcttcaaatccaaagaaaagtacttaaaacatagcc-aaaataacacatgatgtt 192  Q
    |||||||||||||||| ||||||||| |||    ||||||||||||||| | || ||||||||| |||| ||||||||||| |||||| || |||||  |    
T  22967917 tgttcctcaaaccattcacaactcctctaaaatccatcttatttgtcttaacatgcaaagaaaactactaaaaacatagcctaaaatatcatatgatact 22968016  T
Q  193 ccgtcatca 201  Q
    |||||||||    
T  22968017 ccgtcatca 22968025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 94 - 203
Target Start/End: Complemental strand, 15205683 - 15205575
Alignment:
Q  94 tgttcctcaaaccattgacaactcctataattctcatcttatttgtcttcaaatccaaa-gaaaagtacttaaaacatagccaaaataacacatgatgtt 192  Q
    |||||||||||||| ||||||||||| |||  |||||||||||||| || |||| ||||  |||| |||| ||||||||| ||||||| || |||||| |    
T  15205683 tgttcctcaaaccactgacaactcctttaa--ctcatcttatttgtatttaaatgcaaataaaaaatactaaaaacatagtcaaaatatcatatgatgct 15205586  T
Q  193 ccgtcatcaat 203  Q
    | |||||||||    
T  15205585 ctgtcatcaat 15205575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 94 - 179
Target Start/End: Original strand, 16622742 - 16622826
Alignment:
Q  94 tgttcctcaaaccattgacaactcctataattctcatcttatttgtcttcaaatccaaagaaaagtacttaaaacatagccaaaat 179  Q
    |||||||||||||||||||||||||| ||| |||  || |||||||||||||||  ||| |||| |||| |||||||||| |||||    
T  16622742 tgttcctcaaaccattgacaactcctttaactcttttcgtatttgtcttcaaatgtaaa-aaaaatactaaaaacatagctaaaat 16622826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 110 - 179
Target Start/End: Original strand, 25075328 - 25075397
Alignment:
Q  110 gacaactcctataattctcatcttatttgtcttcaaatccaaagaaaagtacttaaaacatagccaaaat 179  Q
    |||||||||| ||| ||| || |||||||||||||| | ||||||||| |||| ||||||||||||||||    
T  25075328 gacaactcctctaactctaatattatttgtcttcaagtgcaaagaaaattactaaaaacatagccaaaat 25075397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 110 - 179
Target Start/End: Original strand, 25133297 - 25133366
Alignment:
Q  110 gacaactcctataattctcatcttatttgtcttcaaatccaaagaaaagtacttaaaacatagccaaaat 179  Q
    |||||||||| ||| ||| || |||||||||||||| | ||||||||| |||| ||||||||||||||||    
T  25133297 gacaactcctctaactctaatattatttgtcttcaagtgcaaagaaaattactaaaaacatagccaaaat 25133366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 16634242 - 16634154
Alignment:
Q  1 cattgatcttcaatcttcatatctttgatccttcatgtgatgtcttgatttttcgattaacatgatttcccactacaaagcactcaaaa 89  Q
    ||||| ||||||| ||||||||  ||| ||||||| ||||||||||||||| |||||| | |||||||| |||| |||| || ||||||    
T  16634242 cattggtcttcaaacttcatattattgttccttcacgtgatgtcttgatttgtcgatttatatgatttctcactgcaaaacattcaaaa 16634154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 124 - 179
Target Start/End: Complemental strand, 22754958 - 22754903
Alignment:
Q  124 ttctcatcttatttgtcttcaaatccaaagaaaagtacttaaaacatagccaaaat 179  Q
    ||||||||||||||||||| |||| |||||||| ||||| |||||||| |||||||    
T  22754958 ttctcatcttatttgtctttaaatgcaaagaaacgtactaaaaacatatccaaaat 22754903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 96 - 199
Target Start/End: Complemental strand, 26070512 - 26070409
Alignment:
Q  96 ttcctcaaaccattgacaactcctataattctcatcttatttgtcttcaaatccaaagaaaagtacttaaaacatagccaaaataacacatgatgttccg 195  Q
    |||||||||  ||||||||||||| ||| |  | ||||||||| ||| |||| |||||||||  ||| ||||||||||||||| | || ||||||||||     
T  26070512 ttcctcaaatgattgacaactcctctaaatgacctcttatttgccttaaaatgcaaagaaaataactaaaaacatagccaaaaaatcatatgatgttcca 26070413  T
Q  196 tcat 199  Q
    ||||    
T  26070412 tcat 26070409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 2 - 80
Target Start/End: Complemental strand, 18178296 - 18178217
Alignment:
Q  2 attgatcttcaatcttcatatctttgatccttcatgtgatgtcttgattttt-cgattaacatgatttcccactacaaag 80  Q
    |||| ||||||||||||||||| | ||||||||||| | ||||||| ||||| | ||| |||||||||| ||||| ||||    
T  18178296 attggtcttcaatcttcatatcctcgatccttcatgcggtgtcttgttttttccaatttacatgatttctcactaaaaag 18178217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 95 - 157
Target Start/End: Original strand, 23157864 - 23157926
Alignment:
Q  95 gttcctcaaaccattgacaactcctataattctcatcttatttgtcttcaaatccaaagaaaa 157  Q
    ||||||||||||||||||||||||| |||||  | ||| ||||  |||||||| |||||||||    
T  23157864 gttcctcaaaccattgacaactcctctaattgacttctaattttccttcaaatgcaaagaaaa 23157926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 24410849 - 24410923
Alignment:
Q  1 cattgatcttcaatcttcatatctttgatccttcatgtgatgtcttgatttttcgattaacatgatttcccacta 75  Q
    |||||||||| |||||||| ||| | ||||||||||||||||||||  |||  | ||| |||||||||| |||||    
T  24410849 cattgatcttgaatcttcagatcctcgatccttcatgtgatgtcttattttgccaattgacatgatttctcacta 24410923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 94 - 144
Target Start/End: Complemental strand, 25680636 - 25680586
Alignment:
Q  94 tgttcctcaaaccattgacaactcctataattctcatcttatttgtcttca 144  Q
    |||||||||||||||||| || ||| |||| ||||||||| ||||||||||    
T  25680636 tgttcctcaaaccattgaaaaatccaataactctcatcttttttgtcttca 25680586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 7742789 - 7742857
Alignment:
Q  1 cattgatcttcaatcttcatatctttgatccttcatgtgatgtcttgatttttcgattaacatgatttc 69  Q
    |||||||||||| |||||||||||| ||| ||||| ||||||| ||| |||   |||| ||||||||||    
T  7742789 cattgatcttcagtcttcatatcttcgattcttcacgtgatgttttgttttactgatttacatgatttc 7742857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 99 - 167
Target Start/End: Original strand, 11274411 - 11274479
Alignment:
Q  99 ctcaaaccattgacaactcctataattctcatcttatttgtcttcaaatccaaagaaaagtacttaaaa 167  Q
    ||||||||||||||||||  | ||  ||| |||||||| ||||| |||| |||||||||||||| ||||    
T  11274411 ctcaaaccattgacaactgatctatctcttatcttattggtctttaaatgcaaagaaaagtactaaaaa 11274479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #34
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 24517541 - 24517473
Alignment:
Q  1 cattgatcttcaatcttcatatctttgatccttcatgtgatgtcttgatttttcgattaacatgatttc 69  Q
    ||||| ||| |||||||  |||| ||||||||||| ||||||| |||||||  ||||| ||||||||||    
T  24517541 cattggtctgcaatctttgtatccttgatccttcacgtgatgtattgatttaccgatttacatgatttc 24517473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #35
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 25 - 89
Target Start/End: Original strand, 25075255 - 25075319
Alignment:
Q  25 ttgatccttcatgtgatgtcttgatttttcgattaacatgatttcccactacaaagcactcaaaa 89  Q
    |||||||||||  ||||||||||||||   |||| ||||||||||  |||||||| |||||||||    
T  25075255 ttgatccttcacatgatgtcttgatttgatgatttacatgatttcttactacaaaacactcaaaa 25075319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #36
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 25 - 89
Target Start/End: Original strand, 25133224 - 25133288
Alignment:
Q  25 ttgatccttcatgtgatgtcttgatttttcgattaacatgatttcccactacaaagcactcaaaa 89  Q
    |||||||||||  ||||||||||||||   |||| ||||||||||  |||||||| |||||||||    
T  25133224 ttgatccttcacatgatgtcttgatttgatgatttacatgatttcttactacaaaacactcaaaa 25133288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 63; Significance: 2e-27; HSPs: 40)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 87
Target Start/End: Original strand, 11769913 - 11769999
Alignment:
Q  1 cattgatcttcaatcttcatatctttgatccttcatgtgatgtcttgatttttcgattaacatgatttcccactacaaagcactcaa 87  Q
    ||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||| |||| |||| |||||||    
T  11769913 cattggtcttcaatcttcatatctttgatcattcatgtgatgtcttgatttttcgatttacatgatttctcactgcaaaacactcaa 11769999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 94 - 178
Target Start/End: Complemental strand, 23223451 - 23223367
Alignment:
Q  94 tgttcctcaaaccattgacaactcctataattctcatcttatttgtcttcaaatccaaagaaaagtacttaaaacatagccaaaa 178  Q
    |||||||||||||||||||||||||| ||| || ||||||| ||||||  |||| ||||||||||||||||||||||||||||||    
T  23223451 tgttcctcaaaccattgacaactcctctaactcccatcttaattgtctcaaaatgcaaagaaaagtacttaaaacatagccaaaa 23223367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 25727828 - 25727916
Alignment:
Q  1 cattgatcttcaatcttcatatctttgatccttcatgtgatgtcttgatttttcgattaacatgatttcccactacaaagcactcaaaa 89  Q
    ||||||||||||||||||||||| || |||||||||||||| | ||||||| |||||| |||||||||| ||||||||| |||||||||    
T  25727828 cattgatcttcaatcttcatatccttaatccttcatgtgatatattgatttgtcgatttacatgatttctcactacaaaacactcaaaa 25727916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 25736236 - 25736324
Alignment:
Q  1 cattgatcttcaatcttcatatctttgatccttcatgtgatgtcttgatttttcgattaacatgatttcccactacaaagcactcaaaa 89  Q
    ||||||||||||||||||||||| || |||||||||||||| | ||||||| |||||| |||||||||| ||||||||| |||||||||    
T  25736236 cattgatcttcaatcttcatatccttaatccttcatgtgatatattgatttgtcgatttacatgatttctcactacaaaacactcaaaa 25736324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 94 - 201
Target Start/End: Original strand, 12423989 - 12424097
Alignment:
Q  94 tgttcctcaaaccattgacaactcctataattctcatcttatttgtcttcaaatccaaag-aaaagtacttaaaacatagccaaaataacacatgatgtt 192  Q
    |||||||||||||||| ||||| ||| |   ||||||||||||||||||||||| ||||| ||||||||| ||||||||||||||||| || |||||| |    
T  12423989 tgttcctcaaaccattaacaacgcctctgtctctcatcttatttgtcttcaaatgcaaagaaaaagtactaaaaacatagccaaaatatcatatgatgct 12424088  T
Q  193 ccgtcatca 201  Q
    | |||||||    
T  12424089 ctgtcatca 12424097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 25730490 - 25730578
Alignment:
Q  1 cattgatcttcaatcttcatatctttgatccttcatgtgatgtcttgatttttcgattaacatgatttcccactacaaagcactcaaaa 89  Q
    |||||||||| ||||||||| || ||||||||||||||||| ||||||||| |||||| |||||||||| | ||||||| |||||||||    
T  25730490 cattgatcttaaatcttcatctccttgatccttcatgtgatatcttgatttgtcgatttacatgatttctcgctacaaaacactcaaaa 25730578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 94 - 204
Target Start/End: Complemental strand, 50047221 - 50047110
Alignment:
Q  94 tgttcctcaaaccattgacaactcctataattctcatcttatttgtcttcaaatccaaagaaaagtacttaaaacatagcc-aaaataacacatgatgtt 192  Q
    |||| |||||| |||||||||||||| || || ||||||||||||||||||||| ||||||||||||   ||||||||||| |||||| || ||| | ||    
T  50047221 tgtttctcaaatcattgacaactcctctacttttcatcttatttgtcttcaaatgcaaagaaaagtatcaaaaacatagccaaaaatatcatatggtatt 50047122  T
Q  193 ccgtcatcaata 204  Q
    ||||||||||||    
T  50047121 ccgtcatcaata 50047110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 94 - 201
Target Start/End: Original strand, 8247732 - 8247840
Alignment:
Q  94 tgttcctcaaaccattgacaactcctataattctcatcttatttgtcttcaaatccaaagaaaa-gtacttaaaacatagccaaaataacacatgatgtt 192  Q
    |||||||||||||||||| | ||||| ||| ||||||||||||||||||||||| ||||||||| ||| | ||||||||| ||||||  || |||||| |    
T  8247732 tgttcctcaaaccattgatatctcctctaactctcatcttatttgtcttcaaatgcaaagaaaaggtattaaaaacatagtcaaaatgtcatatgatgct 8247831  T
Q  193 ccgtcatca 201  Q
    | |||||||    
T  8247832 ctgtcatca 8247840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 94 - 172
Target Start/End: Complemental strand, 12810362 - 12810284
Alignment:
Q  94 tgttcctcaaaccattgacaactcctataattctcatcttatttgtcttcaaatccaaagaaaagtacttaaaacatag 172  Q
    |||||||||||||||||||||||||| ||  ||||| |||||||||||| ||||  ||||||||||||| |||||||||    
T  12810362 tgttcctcaaaccattgacaactcctctatctctcaacttatttgtctttaaatataaagaaaagtactaaaaacatag 12810284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 1 - 79
Target Start/End: Original strand, 25494408 - 25494485
Alignment:
Q  1 cattgatcttcaatcttcatatctttgatccttcatgtgatgtcttgatttttcgattaacatgatttcccactacaaa 79  Q
    ||||| ||||||||||||||||||| | ||||| ||||||||||||||||| |||||| |||||||||| |||||||||    
T  25494408 cattggtcttcaatcttcatatctt-gctccttaatgtgatgtcttgatttgtcgatttacatgatttctcactacaaa 25494485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 96 - 178
Target Start/End: Complemental strand, 26657514 - 26657432
Alignment:
Q  96 ttcctcaaaccattgacaactcctataattctcatcttatttgtcttcaaatccaaagaaaagtacttaaaacatagccaaaa 178  Q
    |||||||||||||||||||||||| ||  ||||| | ||||||||||||||| |||||||||||| | ||||||||| |||||    
T  26657514 ttcctcaaaccattgacaactcctctatctctcaacatatttgtcttcaaatgcaaagaaaagtaataaaaacatagtcaaaa 26657432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 94 - 178
Target Start/End: Complemental strand, 30675524 - 30675439
Alignment:
Q  94 tgttcctcaaaccattgacaactcctataattctcatcttatttgtcttcaaat-ccaaagaaaagtacttaaaacatagccaaaa 178  Q
    |||||||||||||||||||||||||| ||||| ||||||||||||||| |||||   |||||||||| || |||||||||| ||||    
T  30675524 tgttcctcaaaccattgacaactcctctaattttcatcttatttgtctacaaatgaaaaagaaaagttctaaaaacatagcaaaaa 30675439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 104 - 179
Target Start/End: Original strand, 21451900 - 21451976
Alignment:
Q  104 accattgacaactcctataattctcatcttatttgtcttcaaatccaaagaaaa-gtacttaaaacatagccaaaat 179  Q
    |||||||||||||| | ||  ||||||||||||||||||||||| ||||||||| ||||| ||||||||||||||||    
T  21451900 accattgacaactcttctatctctcatcttatttgtcttcaaatgcaaagaaaacgtactaaaaacatagccaaaat 21451976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 94 - 157
Target Start/End: Original strand, 24903370 - 24903433
Alignment:
Q  94 tgttcctcaaaccattgacaactcctataattctcatcttatttgtcttcaaatccaaagaaaa 157  Q
    ||||||||||| |||||||||||||  ||||||||||| ||||||||||||||| |||||||||    
T  24903370 tgttcctcaaatcattgacaactccactaattctcatcatatttgtcttcaaatgcaaagaaaa 24903433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 96 - 178
Target Start/End: Original strand, 18301080 - 18301164
Alignment:
Q  96 ttcctcaaaccattgacaactcctataattctcatcttat--ttgtcttcaaatccaaagaaaagtacttaaaacatagccaaaa 178  Q
    |||||||||||||||||||| ||||||| |||||| || |  |||||||||||| |||||||||||||  |||||||||| ||||    
T  18301080 ttcctcaaaccattgacaacccctataactctcattttttgtttgtcttcaaatgcaaagaaaagtaccaaaaacatagctaaaa 18301164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 97 - 178
Target Start/End: Original strand, 25730649 - 25730729
Alignment:
Q  97 tcctcaaaccattgacaactcctataattctcatcttatttgtcttcaaatccaaagaaaagtacttaaaacatagccaaaa 178  Q
    ||||||| ||||||||| | ||| ||| ||||||||||||||| ||||||| ||||||||||||| ||||||||||| ||||    
T  25730649 tcctcaagccattgacaccccctctaactctcatcttatttgttttcaaatgcaaagaaaagtac-taaaacatagcaaaaa 25730729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 94 - 178
Target Start/End: Original strand, 11770069 - 11770153
Alignment:
Q  94 tgttcctcaaaccattgacaactcctataattctcatcttatttgtcttcaaatccaaagaaaagtacttaaaacatagccaaaa 178  Q
    ||||||| ||||||||||||| | || ||| ||||||||||||| ||||||||| ||||||| |||| | ||||||||| |||||    
T  11770069 tgttccttaaaccattgacaaattctctaactctcatcttatttatcttcaaatgcaaagaatagtattaaaaacatagacaaaa 11770153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 111 - 190
Target Start/End: Complemental strand, 30781783 - 30781703
Alignment:
Q  111 acaactcctataattctcatcttatttgtcttcaaatccaaag-aaaagtacttaaaacatagccaaaataacacatgatg 190  Q
    ||||||||| ||| ||||||||||||||||||||||| ||||| |||| |||| |||||||||| |||||| | |||||||    
T  30781783 acaactcctctaactctcatcttatttgtcttcaaatgcaaagaaaaattactaaaaacatagcaaaaatatcgcatgatg 30781703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 12 - 67
Target Start/End: Original strand, 18300933 - 18300988
Alignment:
Q  12 aatcttcatatctttgatccttcatgtgatgtcttgatttttcgattaacatgatt 67  Q
    |||||||||||| ||||||||||| ||||||||||||||| || ||| ||||||||    
T  18300933 aatcttcatatccttgatccttcacgtgatgtcttgatttgtctatttacatgatt 18300988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 23519688 - 23519770
Alignment:
Q  1 cattgatcttcaatcttcatatctttgatccttcatgtgatgtcttgatttttcgattaacatgatttcccactacaaagcact 84  Q
    ||||| |||||||| |||||||  ||||||||||| || |||||||||| | |||||| |||||||||| ||||||||| ||||    
T  23519688 cattggtcttcaat-ttcatattcttgatccttcacgtaatgtcttgatgtgtcgatttacatgatttctcactacaaaacact 23519770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 34381906 - 34381839
Alignment:
Q  1 cattgatcttcaatcttcatatctttgatccttcatgtgatgtcttgatttttcgattaacatgattt 68  Q
    ||||||||||||| ||||||||| |||||| |||| ||||||| ||||||| |||||| |||| ||||    
T  34381906 cattgatcttcaaacttcatatccttgatctttcacgtgatgttttgatttgtcgatttacattattt 34381839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 9 - 79
Target Start/End: Complemental strand, 23223600 - 23223530
Alignment:
Q  9 ttcaatcttcatatctttgatccttcatgtgatgtcttgatttttcgattaacatgatttcccactacaaa 79  Q
    ||||||||||||||| ||||  ||||||| |||||||||| || | |||| |||||||||| |||||||||    
T  23223600 ttcaatcttcatatccttgaatcttcatgcgatgtcttgacttgttgatttacatgatttctcactacaaa 23223530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 26102252 - 26102195
Alignment:
Q  1 cattgatcttcaatcttcatatctttgatccttcatgtgatgtcttgatttttcgatt 58  Q
    |||||||||||| |||||||||| |||||| |||| ||||||||||| ||| ||||||    
T  26102252 cattgatcttcattcttcatatccttgatcattcacgtgatgtcttgttttgtcgatt 26102195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 16 - 89
Target Start/End: Complemental strand, 26657657 - 26657584
Alignment:
Q  16 ttcatatctttgatccttcatgtgatgtcttgatttttcgattaacatgatttcccactacaaagcactcaaaa 89  Q
    |||||| | |||||||||||  | |||||||||||| |||||| |||||||||  ||||||||| |||||||||    
T  26657657 ttcatagccttgatccttcacctaatgtcttgatttgtcgatttacatgatttttcactacaaaacactcaaaa 26657584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 25 - 89
Target Start/End: Original strand, 8247600 - 8247664
Alignment:
Q  25 ttgatccttcatgtgatgtcttgatttttcgattaacatgatttcccactacaaagcactcaaaa 89  Q
    |||||| |||| ||||||||||||||| | |||| |||||||| | ||||||||| |||||||||    
T  8247600 ttgatctttcacgtgatgtcttgatttgttgatttacatgattcctcactacaaaacactcaaaa 8247664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 94 - 192
Target Start/End: Complemental strand, 18795221 - 18795122
Alignment:
Q  94 tgttcctcaaaccattgacaactcctataattctcatcttatttgtcttcaaatccaaagaaaagtacttaaaacatagcc-aaaataacacatgatgtt 192  Q
    |||||||||||||||||| || |||| ||| |  | ||||||||  |||||||| |||||||||  |||  |||||||||| |||||| |||||||||||    
T  18795221 tgttcctcaaaccattgataaatcctctaaatgacctcttattttccttcaaatgcaaagaaaatcactagaaacatagcctaaaatatcacatgatgtt 18795122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 28 - 79
Target Start/End: Original strand, 23521675 - 23521726
Alignment:
Q  28 atccttcatgtgatgtcttgatttttcgattaacatgatttcccactacaaa 79  Q
    |||||||| ||||||||||||| | |||||| |||||||||| |||||||||    
T  23521675 atccttcacgtgatgtcttgatgtgtcgatttacatgatttctcactacaaa 23521726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 18795376 - 18795330
Alignment:
Q  1 cattgatcttcaatcttcatatctttgatccttcatgtgatgtcttg 47  Q
    |||| ||||||| | |||||||||||||||| |||||||||||||||    
T  18795376 cattcatcttcacttttcatatctttgatccatcatgtgatgtcttg 18795330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 104 - 178
Target Start/End: Original strand, 25266430 - 25266503
Alignment:
Q  104 accattgacaactcctataattctcatcttatttgtcttcaaatccaaagaaaagtacttaaaacatagccaaaa 178  Q
    ||||||||||||| || ||  ||| ||||| | ||||||||||| |||||||||||||| |||||||| ||||||    
T  25266430 accattgacaacttctctatctcttatctt-tctgtcttcaaatgcaaagaaaagtactaaaaacataaccaaaa 25266503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 94 - 167
Target Start/End: Original strand, 23519830 - 23519903
Alignment:
Q  94 tgttcctcaaaccattgacaactcctataattctcatcttatttgtcttcaaatccaaagaaaagtacttaaaa 167  Q
    |||||||||||| ||| ||||||  | ||  ||||||| ||||||||||||||  |||||||||||||| ||||    
T  23519830 tgttcctcaaactattaacaacttttctatctctcatcatatttgtcttcaaaagcaaagaaaagtactaaaaa 23519903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 27461100 - 27461153
Alignment:
Q  1 cattgatcttcaatcttcatatctttgatccttcatgtgatgtcttgatttttc 54  Q
    ||||||||||||  ||||||||| | |||| |||||||||||||||| ||||||    
T  27461100 cattgatcttcatacttcatatcctcgatctttcatgtgatgtcttgttttttc 27461153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 94 - 171
Target Start/End: Complemental strand, 34381748 - 34381671
Alignment:
Q  94 tgttcctcaaaccattgacaactcctataattctcatcttatttgtcttcaaatccaaagaaaagtacttaaaacata 171  Q
    ||||| |||||||||| ||||||||| ||| |  ||||||||||| |||||||| |||| |||| || | ||||||||    
T  34381748 tgttcttcaaaccattaacaactcctctaaattacatcttatttgccttcaaatgcaaataaaactaataaaaacata 34381671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 15416892 - 15416960
Alignment:
Q  1 cattgatcttcaatcttcatatct-ttgatccttcatgtgatgtcttgatttttcgattaacatgattt 68  Q
    |||||||||||| ||||||||||  ||||||||||||||| ||||||| |||  ||| | |||||||||    
T  15416892 cattgatcttcattcttcatatcccttgatccttcatgtggtgtcttgctttgccgaattacatgattt 15416960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 94 - 170
Target Start/End: Complemental strand, 18391122 - 18391046
Alignment:
Q  94 tgttcctcaaaccattgacaactcctataattctcatcttatttgtcttcaaatccaaagaaaagtacttaaaacat 170  Q
    |||| |||||||||||||||||| || ||| |  ||||||||||||||| |||| || ||||||  ||| |||||||    
T  18391122 tgttactcaaaccattgacaacttctttaaatgacatcttatttgtctttaaatacacagaaaataactaaaaacat 18391046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 3 - 47
Target Start/End: Original strand, 19257725 - 19257769
Alignment:
Q  3 ttgatcttcaatcttcatatctttgatccttcatgtgatgtcttg 47  Q
    ||||| ||||||||||||||| | |||| ||||||||||||||||    
T  19257725 ttgatgttcaatcttcatatcctcgatctttcatgtgatgtcttg 19257769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 94 - 138
Target Start/End: Original strand, 25494554 - 25494598
Alignment:
Q  94 tgttcctcaaaccattgacaactcctataattctcatcttatttg 138  Q
    |||||||||||||||||||||||||| ||| | ||||| ||||||    
T  25494554 tgttcctcaaaccattgacaactcctctaactttcatcctatttg 25494598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 26854239 - 26854307
Alignment:
Q  1 cattgatcttcaatcttcatatctttgatccttcatgtgatgtcttgatttttcgattaacatgatttc 69  Q
    |||||| |||||||||||||||| |||||||||||  | |||||||| |||  || || ||||||||||    
T  26854239 cattgaacttcaatcttcatatcattgatccttcacttaatgtcttgttttgccggtttacatgatttc 26854307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 9 - 89
Target Start/End: Complemental strand, 30675672 - 30675592
Alignment:
Q  9 ttcaatcttcatatctttgatccttcatgtgatgtcttgatttttcgattaacatgatttcccactacaaagcactcaaaa 89  Q
    ||||||||||| ||  |||||||||||  ||||||||| | ||  ||||| |||||||||| ||||| ||| |||||||||    
T  30675672 ttcaatcttcacattcttgatccttcacatgatgtcttaaattgccgatttacatgatttctcactataaaacactcaaaa 30675592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 25 - 89
Target Start/End: Complemental strand, 30781932 - 30781868
Alignment:
Q  25 ttgatccttcatgtgatgtcttgatttttcgattaacatgatttcccactacaaagcactcaaaa 89  Q
    |||||||||||  ||||||||||||||   |||| |||||||| | ||||||||| |||||||||    
T  30781932 ttgatccttcacatgatgtcttgatttgatgatttacatgattcctcactacaaaacactcaaaa 30781868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #40
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 31313747 - 31313679
Alignment:
Q  1 cattgatcttcaatcttcatatctttgatccttcatgtgatgtcttgatttttcgattaacatgatttc 69  Q
    |||||||||||| |||||||||  || |||||||| ||||||| ||| |||| | ||| ||||||||||    
T  31313747 cattgatcttcattcttcatattcttaatccttcacgtgatgtattgtttttccaatttacatgatttc 31313679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 62; Significance: 8e-27; HSPs: 30)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 97 - 201
Target Start/End: Original strand, 21505217 - 21505322
Alignment:
Q  97 tcctcaaaccattgacaactcctataattctcatcttatttgtcttcaaatccaaagaaaagtacttaaaacatagcc-aaaataacacatgatgttccg 195  Q
    |||||||||||||||||||| || ||| ||||||||||||||||||||||| ||||||||| |||| ||||||||||| |||||| || |||||| ||||    
T  21505217 tcctcaaaccattgacaactactctaactctcatcttatttgtcttcaaatgcaaagaaaaatactaaaaacatagccaaaaatatcatatgatgctccg 21505316  T
Q  196 tcatca 201  Q
    ||||||    
T  21505317 tcatca 21505322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 94 - 202
Target Start/End: Complemental strand, 25474077 - 25473968
Alignment:
Q  94 tgttcctcaaaccattgacaactcctataattctcatcttatttgtcttcaaatccaaagaaaa-gtacttaaaacatagccaaaataacacatgatgtt 192  Q
    |||||||||||| ||||||||||||| ||| |||||||||||||||||||||||  ||| |||| ||||| ||||||||||||||||  || |||||| |    
T  25474077 tgttcctcaaacaattgacaactcctctaactctcatcttatttgtcttcaaatgaaaataaaatgtactaaaaacatagccaaaatgtcatatgatgct 25473978  T
Q  193 ccgtcatcaa 202  Q
    | ||||||||    
T  25473977 ctgtcatcaa 25473968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 27417182 - 27417270
Alignment:
Q  1 cattgatcttcaatcttcatatctttgatccttcatgtgatgtcttgatttttcgattaacatgatttcccactacaaagcactcaaaa 89  Q
    ||||| |||||||  |||||||| ||||||||||||||||||||||||||| |||||| |||||||||| ||||||||| |||| ||||    
T  27417182 cattggtcttcaacattcatatcattgatccttcatgtgatgtcttgatttgtcgatttacatgatttctcactacaaaacacttaaaa 27417270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 94 - 201
Target Start/End: Complemental strand, 35707843 - 35707735
Alignment:
Q  94 tgttcctcaaaccattgacaactcctataattctcatcttatttgtcttcaaatccaaag-aaaagtacttaaaacatagccaaaataacacatgatgtt 192  Q
    |||| |||||||||||||||||| || ||| ||||||||||||||||||||||| ||||| ||||||||| ||||||||| ||||||  || |||||| |    
T  35707843 tgtttctcaaaccattgacaacttctctaactctcatcttatttgtcttcaaatacaaagaaaaagtactaaaaacatagtcaaaatgtcatatgatgct 35707744  T
Q  193 ccgtcatca 201  Q
    | |||||||    
T  35707743 ctgtcatca 35707735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 7 - 89
Target Start/End: Complemental strand, 24188159 - 24188077
Alignment:
Q  7 tcttcaatcttcatatctttgatccttcatgtgatgtcttgatttttcgattaacatgatttcccactacaaagcactcaaaa 89  Q
    ||||||||||||||||  |||||||||||||||||| |||||||  |||||| |||||||||| |||||||||  ||||||||    
T  24188159 tcttcaatcttcatattcttgatccttcatgtgatgccttgattggtcgatttacatgatttctcactacaaaatactcaaaa 24188077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 93 - 178
Target Start/End: Complemental strand, 32619683 - 32619598
Alignment:
Q  93 ttgttcctcaaaccattgacaactcctataattctcatcttatttgtcttcaaatccaaagaaaagtacttaaaacatagccaaaa 178  Q
    ||||||||| ||||||| ||||||||| ||  |||||  |||||||||||||||| |||||||||||||| |||| ||||||||||    
T  32619683 ttgttcctctaaccattaacaactcctctatctctcaagttatttgtcttcaaatgcaaagaaaagtactaaaaatatagccaaaa 32619598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 21505058 - 21505146
Alignment:
Q  1 cattgatcttcaatcttcatatctttgatccttcatgtgatgtcttgatttttcgattaacatgatttcccactacaaagcactcaaaa 89  Q
    ||||| ||||||| ||||| ||| |||||| ||||||||||||||| |||| |||||| |||||||| | ||||||||| |||||||||    
T  21505058 cattggtcttcaaacttcacatccttgatctttcatgtgatgtcttaatttatcgatttacatgattcctcactacaaaacactcaaaa 21505146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 94 - 157
Target Start/End: Original strand, 16593827 - 16593890
Alignment:
Q  94 tgttcctcaaaccattgacaactcctataattctcatcttatttgtcttcaaatccaaagaaaa 157  Q
    ||||| |||||||||||||||||||||||| ||| ||||||||||||||||||| |||| ||||    
T  16593827 tgttcatcaaaccattgacaactcctataactctaatcttatttgtcttcaaatgcaaaaaaaa 16593890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 8 - 94
Target Start/End: Original strand, 18236229 - 18236314
Alignment:
Q  8 cttcaatcttcatatctttgatccttcatgtgatgtcttgatttttcgattaacatgatttcccactacaaagcactcaaaatactt 94  Q
    ||||||||||||||| | |||||||||||||||||||||| |||  ||| | |||||||||| ||||| |||| |||||||||||||    
T  18236229 cttcaatcttcatatttgtgatccttcatgtgatgtcttgttttgccgagttacatgatttctcactaaaaag-actcaaaatactt 18236314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 94 - 155
Target Start/End: Complemental strand, 30998811 - 30998750
Alignment:
Q  94 tgttcctcaaaccattgacaactcctataattctcatcttatttgtcttcaaatccaaagaa 155  Q
    |||||||||||||||||||||||| | ||| ||||||||||||||||||||||  |||||||    
T  30998811 tgttcctcaaaccattgacaactcatctaactctcatcttatttgtcttcaaaggcaaagaa 30998750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 1732746 - 1732678
Alignment:
Q  1 cattgatcttcaatcttcatatctttgatccttcatgtgatgtcttgatttttcgattaacatgatttc 69  Q
    ||||||||||||||||||||||  || |||||||||||||||||||| ||| || ||| ||||||||||    
T  1732746 cattgatcttcaatcttcatattcttaatccttcatgtgatgtcttgttttgtcaatttacatgatttc 1732678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 22511141 - 22511053
Alignment:
Q  1 cattgatcttcaatcttcatatctttgatccttcatgtgatgtcttgatttttcgattaacatgatttcccactacaaagcactcaaaa 89  Q
    |||||| | |||||||||||||| |  ||| ||||  ||||||||||||||||||||| |||||||||| ||||||||| || ||||||    
T  22511141 cattgaacatcaatcttcatatcctcaatctttcacttgatgtcttgatttttcgatttacatgatttctcactacaaaacaatcaaaa 22511053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 94 - 178
Target Start/End: Original strand, 28278498 - 28278581
Alignment:
Q  94 tgttcctcaaaccattgacaactcctataattctcatcttatttgtcttcaaatccaaagaaaagtacttaaaacatagccaaaa 178  Q
    ||||| |||||||||||| || |||| ||| |||| ||||||||| |||||||| ||||||||||||| ||||||||||| ||||    
T  28278498 tgttcttcaaaccattgagaaatcctctaactctcttcttatttgccttcaaatgcaaagaaaagtac-taaaacatagcaaaaa 28278581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 93 - 171
Target Start/End: Complemental strand, 1733141 - 1733063
Alignment:
Q  93 ttgttcctcaaaccattgacaactcctataattctcatcttatttgtcttcaaatccaaagaaaagtacttaaaacata 171  Q
    ||||| |||||  |||||||||||||| ||| |||||||| ||||||||||||||  ||| ||||||||| ||||||||    
T  1733141 ttgtttctcaactcattgacaactcctctaactctcatctcatttgtcttcaaatgaaaaaaaaagtactaaaaacata 1733063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 7 - 79
Target Start/End: Complemental strand, 15829310 - 15829239
Alignment:
Q  7 tcttcaatcttcatatctttgatccttcatgtgatgtcttgatttttcgattaacatgatttcccactacaaa 79  Q
    |||||||| ||||||||  |||||||||| ||||||||||||||| |||||| |||||||||| |||| ||||    
T  15829310 tcttcaat-ttcatatcaatgatccttcacgtgatgtcttgatttgtcgatttacatgatttctcactgcaaa 15829239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 93 - 202
Target Start/End: Original strand, 18236376 - 18236486
Alignment:
Q  93 ttgttcctcaaaccattgacaactcctataattctcatcttatttgtcttcaaatccaaagaaaagtacttaaaacatagc-caaaataacacatgatgt 191  Q
    ||||| |||||||||||||||||| |||||| |  ||  || |||| |||||||| |||||||||  ||| ||||||||||  |||||| || ||||||     
T  18236376 ttgtttctcaaaccattgacaacttctataaattacaatttctttgccttcaaatgcaaagaaaataactaaaaacatagcataaaatatcatatgatgc 18236475  T
Q  192 tccgtcatcaa 202  Q
    |||||||||||    
T  18236476 tccgtcatcaa 18236486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 94 - 156
Target Start/End: Original strand, 21844704 - 21844766
Alignment:
Q  94 tgttcctcaaaccattgacaactcctataattctcatcttatttgtcttcaaatccaaagaaa 156  Q
    ||||||| |||||||||||||||||| ||| |  || ||||||||||||||||| ||||||||    
T  21844704 tgttcctaaaaccattgacaactcctctaaattacaacttatttgtcttcaaatgcaaagaaa 21844766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 24047577 - 24047531
Alignment:
Q  1 cattgatcttcaatcttcatatctttgatccttcatgtgatgtcttg 47  Q
    |||||||||||| |||||||||| ||||||||||||| |||||||||    
T  24047577 cattgatcttcattcttcatatccttgatccttcatgggatgtcttg 24047531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 15 - 69
Target Start/End: Original strand, 27917916 - 27917970
Alignment:
Q  15 cttcatatctttgatccttcatgtgatgtcttgatttttcgattaacatgatttc 69  Q
    |||||| || |||||||||||| |||||||||||||| |||||| ||||||||||    
T  27917916 cttcatctccttgatccttcatctgatgtcttgatttgtcgattgacatgatttc 27917970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 19541232 - 19541145
Alignment:
Q  1 cattgatcttcaatcttcatatctttgatccttcatgtgatgtcttgatttttcgattaacatgatttcccactacaaagcactcaaaa 89  Q
    ||||| ||||||||||||||||| | |||||||||  |||||||||  |||  ||||| |||||||||| ||||| |||| ||||||||    
T  19541232 cattggtcttcaatcttcatatcctcgatccttcacttgatgtcttattttgccgatttacatgatttctcactagaaag-actcaaaa 19541145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 94 - 189
Target Start/End: Original strand, 19949629 - 19949725
Alignment:
Q  94 tgttcctcaaaccattgacaactcctataattctcatcttatttgtcttcaaatccaaag-aaaagtacttaaaacatagccaaaataacacatgat 189  Q
    |||||||||||| ||| |||||||||  |  |||||| |||||| ||||||||| ||||| ||||||||| |||||||||  |||||| || |||||    
T  19949629 tgttcctcaaactattaacaactcctcaatctctcatgttatttatcttcaaatacaaagaaaaagtactaaaaacatagaaaaaatatcatatgat 19949725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 94 - 201
Target Start/End: Original strand, 32276588 - 32276696
Alignment:
Q  94 tgttcctcaaaccattgacaactcctataattctcatcttatttgtcttcaaatccaaagaaaagtacttaaaacatagccaaaa-taacacatgatgtt 192  Q
    ||||| |||||||||||||| ||||| ||| |  | ||||||||  |||||||| |||||||||  ||| |||||||| |||||| || || ||||||||    
T  32276588 tgttcttcaaaccattgacatctcctttaaatgacctcttattttccttcaaatgcaaagaaaataactaaaaacatatccaaaagtaccatatgatgtt 32276687  T
Q  193 ccgtcatca 201  Q
    || ||||||    
T  32276688 ccttcatca 32276696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 131 - 178
Target Start/End: Original strand, 31914045 - 31914092
Alignment:
Q  131 cttatttgtcttcaaatccaaagaaaagtacttaaaacatagccaaaa 178  Q
    ||||||||||||||||| ||||||||| |||| |||||||||| ||||    
T  31914045 cttatttgtcttcaaatgcaaagaaaaatactaaaaacatagcaaaaa 31914092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 15454458 - 15454504
Alignment:
Q  1 cattgatcttcaatcttcatatctttgatccttcatgtgatgtcttg 47  Q
    |||| ||||| | |||||||||| |||||||||||||||||||||||    
T  15454458 catttatctttattcttcatatccttgatccttcatgtgatgtcttg 15454504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 94 - 156
Target Start/End: Original strand, 21843077 - 21843139
Alignment:
Q  94 tgttcctcaaaccattgacaactcctataattctcatcttatttgtcttcaaatccaaagaaa 156  Q
    ||||||| ||||||||| |||||||| ||| |  || ||||||||||||||||| ||||||||    
T  21843077 tgttcctaaaaccattggcaactcctctaaattacaacttatttgtcttcaaatgcaaagaaa 21843139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 95 - 132
Target Start/End: Complemental strand, 15829173 - 15829136
Alignment:
Q  95 gttcctcaaaccattgacaactcctataattctcatct 132  Q
    ||||||||||||||||||||||||| ||| ||||||||    
T  15829173 gttcctcaaaccattgacaactcctctaactctcatct 15829136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 20 - 89
Target Start/End: Original strand, 21849012 - 21849080
Alignment:
Q  20 tatctttgatccttcatgtgatgtcttgatttttcgattaacatgatttcccactacaaagcactcaaaa 89  Q
    |||| ||||||||||||||||||||||| | || ||||| |||| ||||| ||||| |||| ||||||||    
T  21849012 tatccttgatccttcatgtgatgtcttgttcttccgatttacattatttctcactaaaaag-actcaaaa 21849080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 14921958 - 14922026
Alignment:
Q  1 cattgatcttcaatcttcatatctttgatccttcatgtgatgtcttgatttttcgattaacatgatttc 69  Q
    |||||| |||||||||||||||| | ||| |||||  |||||| ||| |||| ||||| ||||||||||    
T  14921958 cattgaacttcaatcttcatatcctcgattcttcacatgatgtattgtttttccgatttacatgatttc 14922026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 9 - 89
Target Start/End: Original strand, 17415090 - 17415169
Alignment:
Q  9 ttcaatcttcatatctttgatccttcatgtgatgtcttgatttttcgattaacatgatttcccactacaaagcactcaaaa 89  Q
    |||||||||||| || | ||||||||| ||||||||||| |||  ||||| ||| |||||| ||||| |||| ||||||||    
T  17415090 ttcaatcttcatgtcctcgatccttcacgtgatgtcttgttttgccgatttacacgatttctcactaaaaag-actcaaaa 17415169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 25 - 89
Target Start/End: Complemental strand, 35707975 - 35707911
Alignment:
Q  25 ttgatccttcatgtgatgtcttgatttttcgattaacatgatttcccactacaaagcactcaaaa 89  Q
    ||||| |||||  |||||||||||||||  |||| |||||||| | ||||||||| |||||||||    
T  35707975 ttgatacttcacatgatgtcttgattttatgatttacatgattcctcactacaaaacactcaaaa 35707911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 60; Significance: 1e-25; HSPs: 31)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 96 - 190
Target Start/End: Complemental strand, 12956527 - 12956432
Alignment:
Q  96 ttcctcaaaccattgacaactcctataattctcatcttatttgtcttcaaatccaaagaaaagtacttaaaacatag-ccaaaataacacatgatg 190  Q
    |||||||||||||||||||||||| ||| ||||||||||||| ||||||||| |||||||||||||| ||||||||| | |||||| |||||||||    
T  12956527 ttcctcaaaccattgacaactcctctaactctcatcttatttatcttcaaatgcaaagaaaagtactaaaaacatagacaaaaatatcacatgatg 12956432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 94 - 172
Target Start/End: Original strand, 14977182 - 14977260
Alignment:
Q  94 tgttcctcaaaccattgacaactcctataattctcatcttatttgtcttcaaatccaaagaaaagtacttaaaacatag 172  Q
    |||||||||||||||||||||||||| ||| |||||||||||||||||| |||| ||||||||||| || |||||||||    
T  14977182 tgttcctcaaaccattgacaactcctctaactctcatcttatttgtcttaaaatgcaaagaaaagtgctaaaaacatag 14977260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 100 - 201
Target Start/End: Original strand, 16052358 - 16052460
Alignment:
Q  100 tcaaaccattgacaactcctataattctcatcttatttgtcttcaaatccaaagaaaagtacttaaaacatagcc-aaaataacacatgatgttccgtca 198  Q
    |||||||||||||||||||| ||| |||||| ||||||||| |||||| |||| ||||||||| ||||||||||| |||||| || |||||| |||||||    
T  16052358 tcaaaccattgacaactcctctaactctcattttatttgtcctcaaatgcaaataaaagtactaaaaacatagccaaaaatatcatatgatgctccgtca 16052457  T
Q  199 tca 201  Q
    |||    
T  16052458 tca 16052460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 96 - 178
Target Start/End: Complemental strand, 24120269 - 24120187
Alignment:
Q  96 ttcctcaaaccattgacaactcctataattctcatcttatttgtcttcaaatccaaagaaaagtacttaaaacatagccaaaa 178  Q
    ||||||||||| |||||||||||| ||| ||||||||||||| ||||||||| |||||||||||||| |||||||||| ||||    
T  24120269 ttcctcaaaccgttgacaactcctctaactctcatcttatttctcttcaaatgcaaagaaaagtactaaaaacatagcaaaaa 24120187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 94 - 201
Target Start/End: Original strand, 13082012 - 13082120
Alignment:
Q  94 tgttcctcaaaccattgacaactcctataattctcatcttatttgtcttcaaatccaaag-aaaagtacttaaaacatagccaaaataacacatgatgtt 192  Q
    |||| |||||| |||||||||||||| ||| ||||||||||||||||||||||| ||||| ||||||||| ||||||||  ||||||  || ||||||||    
T  13082012 tgtttctcaaatcattgacaactcctctaactctcatcttatttgtcttcaaatgcaaagaaaaagtactaaaaacataatcaaaatgtcatatgatgtt 13082111  T
Q  193 ccgtcatca 201  Q
      |||||||    
T  13082112 ttgtcatca 13082120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 16052196 - 16052284
Alignment:
Q  1 cattgatcttcaatcttcatatctttgatccttcatgtgatgtcttgatttttcgattaacatgatttcccactacaaagcactcaaaa 89  Q
    ||||| |||| |||||||||||| || |||||||||||||||||||||||| | |||| | |||||||| ||||||||| |||||||||    
T  16052196 cattggtctttaatcttcatatcctttatccttcatgtgatgtcttgatttgttgatttagatgatttctcactacaaaacactcaaaa 16052284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 94 - 201
Target Start/End: Complemental strand, 16054334 - 16054226
Alignment:
Q  94 tgttcctcaaaccattgacaactcctataattctcatcttatttgtcttcaaatccaaag-aaaagtacttaaaacatagccaaaataacacatgatgtt 192  Q
    ||||||| ||| |||||||||||||| ||| ||| ||||||||||||||||||| ||||| ||||||||| || |||||||||||||  || |||||| |    
T  16054334 tgttccttaaatcattgacaactcctctaactcttatcttatttgtcttcaaatgcaaagaaaaagtactaaagacatagccaaaatgtcatatgatgct 16054235  T
Q  193 ccgtcatca 201  Q
    | |||||||    
T  16054234 ctgtcatca 16054226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 94 - 178
Target Start/End: Original strand, 28901415 - 28901499
Alignment:
Q  94 tgttcctcaaaccattgacaactcctataattctcatcttatttgtcttcaaatccaaagaaaagtacttaaaacatagccaaaa 178  Q
    |||||||||||||||||||||||||| ||  ||||| ||||||||| ||||||| |||||||||||| | ||| |||||||||||    
T  28901415 tgttcctcaaaccattgacaactcctctatctctcaacttatttgtattcaaatgcaaagaaaagtattaaaagcatagccaaaa 28901499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 32239483 - 32239395
Alignment:
Q  1 cattgatcttcaatcttcatatctttgatccttcatgtgatgtcttgatttttcgattaacatgatttcccactacaaagcactcaaaa 89  Q
    |||||| |||||||||||||||| || |||||||||||||||||| ||||| || ||| ||| |||||| ||||||||| |||||||||    
T  32239483 cattgaacttcaatcttcatatcctttatccttcatgtgatgtctcgatttgtcaatttacacgatttctcactacaaaacactcaaaa 32239395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 94 - 178
Target Start/End: Complemental strand, 32239327 - 32239243
Alignment:
Q  94 tgttcctcaaaccattgacaactcctataattctcatcttatttgtcttcaaatccaaagaaaagtacttaaaacatagccaaaa 178  Q
    |||| ||||||||||||||||||||| ||||| | ||||||| | |||||||||  |||||||||| || |||||||||||||||    
T  32239327 tgttactcaaaccattgacaactcctctaattattatcttatctatcttcaaatgtaaagaaaagtgctaaaaacatagccaaaa 32239243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 7 - 69
Target Start/End: Complemental strand, 24696771 - 24696709
Alignment:
Q  7 tcttcaatcttcatatctttgatccttcatgtgatgtcttgatttttcgattaacatgatttc 69  Q
    ||||||||||||||||| ||||||||| ||||||||||||||||| | |||| ||||||||||    
T  24696771 tcttcaatcttcatatccttgatcctttatgtgatgtcttgatttgttgatttacatgatttc 24696709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 104 - 201
Target Start/End: Original strand, 29047401 - 29047499
Alignment:
Q  104 accattgacaactcctataattctcatcttatttgtcttcaaatccaaag-aaaagtacttaaaacatagccaaaataacacatgatgttccgtcatca 201  Q
    |||||||||||||||| ||| ||||||||||||||| ||||||| ||||| ||||||||| | || ||||||||| || || |||||| || |||||||    
T  29047401 accattgacaactcctctaactctcatcttatttgttttcaaatgcaaagaaaaagtactaataatatagccaaattatcatatgatgctctgtcatca 29047499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 9 - 92
Target Start/End: Original strand, 22894458 - 22894540
Alignment:
Q  9 ttcaatcttcatatctttgatccttcatgtgatgtcttgatttttcgattaacatgatttcccactacaaagcactcaaaatac 92  Q
    ||||||||| ||||| ||||||||||||||||| |||||| ||||||||| |||||||||| ||||| | | |||| |||||||    
T  22894458 ttcaatctttatatcattgatccttcatgtgatatcttga-ttttcgatttacatgatttctcactatagaacactaaaaatac 22894540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 101 - 174
Target Start/End: Complemental strand, 6358731 - 6358658
Alignment:
Q  101 caaaccattgacaactcctataattctcatcttatttgtcttcaaatccaaagaaaagtacttaaaacatagcc 174  Q
    ||||||||| ||||||||| ||  ||||| ||||| ||||||||||| |||| ||||||||| |||||||||||    
T  6358731 caaaccattaacaactcctctatctctcaacttatatgtcttcaaatgcaaataaaagtactaaaaacatagcc 6358658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 79
Target Start/End: Original strand, 14977028 - 14977108
Alignment:
Q  1 cattgatcttcaatcttcatatctttgatccttcatgtgatgtcttgatttttcgattaacatga--tttcccactacaaa 79  Q
    ||||||| |||||||||||| || |||||| |||||||||||||||||||| || ||| ||||||  | ||||||||||||    
T  14977028 cattgattttcaatcttcatgtccttgatctttcatgtgatgtcttgatttgtcaatttacatgacttctcccactacaaa 14977108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 28859158 - 28859246
Alignment:
Q  1 cattgatcttcaatcttcatatctttgatccttcatgtgatgtcttgatttttcgattaacatgatttcccactacaaagcactcaaaa 89  Q
    |||||||||| |||||| ||||| ||||||||||||||||||| | | ||| || ||| ||||||||||  |||||||| | |||||||    
T  28859158 cattgatctttaatcttgatatccttgatccttcatgtgatgtttaggtttgtccatttacatgatttcttactacaaaaccctcaaaa 28859246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 9 - 79
Target Start/End: Original strand, 28901276 - 28901346
Alignment:
Q  9 ttcaatcttcatatctttgatccttcatgtgatgtcttgatttttcgattaacatgatttcccactacaaa 79  Q
    ||||||||||||||| ||||| |||||| |||||||||||||| |||||  |||| ||||  |||||||||    
T  28901276 ttcaatcttcatatcattgattcttcatatgatgtcttgatttgtcgatgtacattatttatcactacaaa 28901346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 2 - 67
Target Start/End: Complemental strand, 12956675 - 12956610
Alignment:
Q  2 attgatcttcaatcttcatatctttgatccttcatgtgatgtcttgatttttcgattaacatgatt 67  Q
    ||||||||||| |||||||||| ||||| ||||||||||| ||||| ||| |||||| | ||||||    
T  12956675 attgatcttcagtcttcatatccttgattcttcatgtgatatcttggtttatcgatttatatgatt 12956610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 7 - 92
Target Start/End: Original strand, 24584650 - 24584734
Alignment:
Q  7 tcttcaatcttcatatctttgatccttcatgtgatgtcttgatttttcgattaacatgatttcccactacaaagcactcaaaatac 92  Q
    |||||||| ||||||||  ||||| ||||||||||||||||| || || ||| ||| |||||| |||||||||  |||||||||||    
T  24584650 tcttcaattttcatatccatgatctttcatgtgatgtcttga-ttgtcaatttacaagatttctcactacaaaaaactcaaaatac 24584734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 94
Target Start/End: Complemental strand, 29291965 - 29291873
Alignment:
Q  1 cattgatcttcaatcttcatatctttgatccttcatgtgatgtcttgatttttcgattaacatgatttcccactacaaagcactcaaaatactt 94  Q
    |||||||||||||| |||||||| | ||| ||||| ||||| ||||| |||  ||||| ||||||||||  |||| |||| |||||||||||||    
T  29291965 cattgatcttcaatattcatatcctcgattcttcacgtgatatcttgttttgccgatttacatgatttcttactaaaaag-actcaaaatactt 29291873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 97 - 176
Target Start/End: Complemental strand, 26882445 - 26882365
Alignment:
Q  97 tcctcaaaccattgacaactcctataattctcatcttatttgtcttcaaatccaaag-aaaagtacttaaaacatagccaa 176  Q
    |||| ||||||||| |||||||| ||| |||||| |||||||||||| | | | ||| ||||||||| |||||||||||||    
T  26882445 tccttaaaccattggcaactcctttaaatctcattttatttgtcttcgattgcgaagaaaaagtactaaaaacatagccaa 26882365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 4 - 80
Target Start/End: Complemental strand, 28074705 - 28074629
Alignment:
Q  4 tgatcttcaatcttcatatctttgatccttcatgtgatgtcttgatttttcgattaacatgatttcccactacaaag 80  Q
    ||||||||| |||||||||| |||||||||||| |||||||||| |||    ||| |||||||||| ||||| ||||    
T  28074705 tgatcttcattcttcatatccttgatccttcatttgatgtcttgttttgcatatttacatgatttctcactaaaaag 28074629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 30543956 - 30543888
Alignment:
Q  1 cattgatcttcaatcttcatatctttgatccttcatgtgatgtcttgatttttcgattaacatgatttc 69  Q
    |||||| |||||||||||||||| |  |||||||||||||| ||||| |||  ||||| ||||||||||    
T  30543956 cattgaacttcaatcttcatatcctcaatccttcatgtgatatcttgttttaccgatttacatgatttc 30543888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 94 - 157
Target Start/End: Original strand, 5570216 - 5570279
Alignment:
Q  94 tgttcctcaaaccattgacaactcctataattctcatcttatttgtcttcaaatccaaagaaaa 157  Q
    |||||||||||  |||||||||||||  || ||||||||||||| ||||||||| |||| ||||    
T  5570216 tgttcctcaaagtattgacaactccttcaaatctcatcttatttttcttcaaatgcaaaaaaaa 5570279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 19 - 94
Target Start/End: Complemental strand, 28902267 - 28902192
Alignment:
Q  19 atatctttgatccttcatgtgatgtcttgatttttcgattaacatgatttcccactacaaagcactcaaaatactt 94  Q
    ||||| ||||||||||| ||||||||| ||||| | |||| |||||||||| |||||| || |||| |||| ||||    
T  28902267 atatcattgatccttcacgtgatgtctcgatttgttgatttacatgatttctcactactaaacactaaaaacactt 28902192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 28292020 - 28292086
Alignment:
Q  1 cattgatcttcaatcttcatatctttgatccttcatgtgatgtcttgatttttcgattaacatgatt 67  Q
    |||| |||||||||||||||||| |  |||||||||||||||||||  |||  ||||| ||||||||    
T  28292020 cattaatcttcaatcttcatatcctcaatccttcatgtgatgtcttattttggcgatttacatgatt 28292086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 5153953 - 5153885
Alignment:
Q  1 cattgatcttcaatcttcatatctttgatccttcatgtgatgtcttgatttttcgattaacatgatttc 69  Q
    ||||||||||||||||||||||| | |||||||||  | |||||||| |||  | ||| ||||||||||    
T  5153953 cattgatcttcaatcttcatatcctcgatccttcactttatgtcttgttttgcctatttacatgatttc 5153885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 94 - 174
Target Start/End: Original strand, 13530180 - 13530260
Alignment:
Q  94 tgttcctcaaaccattgacaactcctataattctcatcttatttgtcttcaaatccaaagaaaagtacttaaaacatagcc 174  Q
    ||||||||||||||| |||| ||||| ||| |  | |||||||||||||||| | ||||||| |  ||| |||||||||||    
T  13530180 tgttcctcaaaccatcgacatctcctctaaatgacctcttatttgtcttcaattgcaaagaatataactaaaaacatagcc 13530260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 94 - 174
Target Start/End: Original strand, 13619719 - 13619799
Alignment:
Q  94 tgttcctcaaaccattgacaactcctataattctcatcttatttgtcttcaaatccaaagaaaagtacttaaaacatagcc 174  Q
    ||||||||||||||| |||| ||||| ||| |  | |||||||||||||||| | ||||||| |  ||| |||||||||||    
T  13619719 tgttcctcaaaccatcgacatctcctctaaatgacctcttatttgtcttcaattgcaaagaatataactaaaaacatagcc 13619799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 25 - 89
Target Start/End: Original strand, 29047262 - 29047326
Alignment:
Q  25 ttgatccttcatgtgatgtcttgatttttcgattaacatgatttcccactacaaagcactcaaaa 89  Q
    |||||||||||  ||||||||||| |||  |||| |||||||| | ||||||||| |||||||||    
T  29047262 ttgatccttcacatgatgtcttgaatttatgatttacatgattcctcactacaaaacactcaaaa 29047326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 3 - 35
Target Start/End: Original strand, 30851021 - 30851053
Alignment:
Q  3 ttgatcttcaatcttcatatctttgatccttca 35  Q
    ||||||||||||||||||||| |||||||||||    
T  30851021 ttgatcttcaatcttcatatccttgatccttca 30851053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 60; Significance: 1e-25; HSPs: 32)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 8 - 79
Target Start/End: Complemental strand, 7494885 - 7494814
Alignment:
Q  8 cttcaatcttcatatctttgatccttcatgtgatgtcttgatttttcgattaacatgatttcccactacaaa 79  Q
    |||||||||||||||| |||||||||||||||||||||||||||||| ||| ||||||||||||||||||||    
T  7494885 cttcaatcttcatatccttgatccttcatgtgatgtcttgatttttcaatttacatgatttcccactacaaa 7494814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 94
Target Start/End: Complemental strand, 29544715 - 29544622
Alignment:
Q  1 cattgatcttcaatcttcatatctttgatccttcatgtgatgtcttgatttttcgattaacatgatttcccactacaaagcactcaaaatactt 94  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||| |||||||| |  |||| ||| ||||||||| ||||    
T  29544715 cattgatcttcaatcttcatatctttgatccttcatgtgatgtcttggtttgtcgatttacatgattccttactaaaaaacactcaaaacactt 29544622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 9 - 89
Target Start/End: Complemental strand, 7142286 - 7142206
Alignment:
Q  9 ttcaatcttcatatctttgatccttcatgtgatgtcttgatttttcgattaacatgatttcccactacaaagcactcaaaa 89  Q
    ||||||||||||||||||||||||||| ||||||||||||||| |||||| |||||||||| ||||||||| |||| ||||    
T  7142286 ttcaatcttcatatctttgatccttcacgtgatgtcttgatttgtcgatttacatgatttctcactacaaaacacttaaaa 7142206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 94 - 178
Target Start/End: Complemental strand, 29544559 - 29544475
Alignment:
Q  94 tgttcctcaaaccattgacaactcctataattctcatcttatttgtcttcaaatccaaagaaaagtacttaaaacatagccaaaa 178  Q
    |||||||||||| ||||||||||||| ||| ||||||||||||||||||||||| ||||||||| || | |||||||||||||||    
T  29544559 tgttcctcaaactattgacaactcctctaactctcatcttatttgtcttcaaatgcaaagaaaattaataaaaacatagccaaaa 29544475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 94 - 179
Target Start/End: Original strand, 22067881 - 22067967
Alignment:
Q  94 tgttcctcaaaccattgacaactcctataattctcatcttatttgtcttcaaatccaaa-gaaaagtacttaaaacatagccaaaat 179  Q
    |||||||||||||||||||||||||| ||| ||||||||||||||||||||||| ||||  |||| |||| ||||||||||||||||    
T  22067881 tgttcctcaaaccattgacaactcctttaactctcatcttatttgtcttcaaatgcaaataaaaattactaaaaacatagccaaaat 22067967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 94 - 178
Target Start/End: Original strand, 20470885 - 20470969
Alignment:
Q  94 tgttcctcaaaccattgacaactcctataattctcatcttatttgtcttcaaatccaaagaaaagtacttaaaacatagccaaaa 178  Q
    |||||||||||||||||||||||||| ||||| |||||||||||||||||| ||  ||| ||||||||| |||||| ||||||||    
T  20470885 tgttcctcaaaccattgacaactcctctaattatcatcttatttgtcttcacatataaataaaagtactaaaaacaaagccaaaa 20470969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 102 - 201
Target Start/End: Complemental strand, 20446271 - 20446171
Alignment:
Q  102 aaaccattgacaactcctataattctcatcttatttgtcttcaaatccaaag-aaaagtacttaaaacatagccaaaataacacatgatgttccgtcatc 200  Q
    |||||||||||||||||| |||||||||||||| |||||||||||| ||||| ||||||| | |||||||||| |||||| || ||| || || ||||||    
T  20446271 aaaccattgacaactcctctaattctcatcttaattgtcttcaaatgcaaagaaaaagtattaaaaacatagctaaaatatcatatgttgctctgtcatc 20446172  T
Q  201 a 201  Q
    |    
T  20446171 a 20446171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 8 - 68
Target Start/End: Original strand, 9761341 - 9761401
Alignment:
Q  8 cttcaatcttcatatctttgatccttcatgtgatgtcttgatttttcgattaacatgattt 68  Q
    |||||||||||||||| ||||||||||| ||||||||||||||| |||||| |||||||||    
T  9761341 cttcaatcttcatatccttgatccttcacgtgatgtcttgatttgtcgatttacatgattt 9761401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 23125096 - 23125008
Alignment:
Q  1 cattgatcttcaatcttcatatctttgatccttcatgtgatgtcttgatttttcgattaacatgatttcccactacaaagcactcaaaa 89  Q
    |||||| |||||||||||||||| | |||||||||  |||||||||||||  |||||| |||||||||| ||||| ||| |||||||||    
T  23125096 cattgaacttcaatcttcatatcctcgatccttcacatgatgtcttgattggtcgatttacatgatttctcactagaaaacactcaaaa 23125008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 94 - 178
Target Start/End: Complemental strand, 7142138 - 7142054
Alignment:
Q  94 tgttcctcaaaccattgacaactcctataattctcatcttatttgtcttcaaatccaaagaaaagtacttaaaacatagccaaaa 178  Q
    ||||||| |||||||||||||||| |||   ||||| |||||||||||| |||| ||||||||| || | |||||||||||||||    
T  7142138 tgttccttaaaccattgacaactcatatctctctcaacttatttgtctttaaatgcaaagaaaactattaaaaacatagccaaaa 7142054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 102 - 189
Target Start/End: Complemental strand, 7815355 - 7815267
Alignment:
Q  102 aaaccattgacaactcctataattctcatcttatttgtcttcaaatccaa-agaaaagtacttaaaacatagccaaaataacacatgat 189  Q
    ||||||||||||| |||| ||| ||||||||||||| ||||||||| ||| | ||||||||| |||||||| |||||||| || |||||    
T  7815355 aaaccattgacaagtcctttaactctcatcttatttatcttcaaatgcaacaaaaaagtactaaaaacataaccaaaatatcatatgat 7815267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 8 - 75
Target Start/End: Original strand, 4977746 - 4977813
Alignment:
Q  8 cttcaatcttcatatctttgatccttcatgtgatgtcttgatttttcgattaacatgatttcccacta 75  Q
    |||||||||||||||| | ||||||||||||||||||||||||| |  ||| |||||||||| |||||    
T  4977746 cttcaatcttcatatcctcgatccttcatgtgatgtcttgatttgtatatttacatgatttctcacta 4977813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 100 - 189
Target Start/End: Complemental strand, 315219 - 315129
Alignment:
Q  100 tcaaaccattgacaactcctataattctcatcttatttgtcttcaaatccaaag-aaaagtacttaaaacatagccaaaataacacatgat 189  Q
    |||||||||||||||||||| ||| ||||||||||||| |||||||||   ||| ||||||||  ||||||||| ||||||| || |||||    
T  315219 tcaaaccattgacaactcctctaactctcatcttatttttcttcaaatattaagaaaaagtaccgaaaacatagtcaaaatatcatatgat 315129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 96 - 146
Target Start/End: Original strand, 1255290 - 1255340
Alignment:
Q  96 ttcctcaaaccattgacaactcctataattctcatcttatttgtcttcaaa 146  Q
    |||||||||||||||||||||||| ||| ||||| ||||||||||||||||    
T  1255290 ttcctcaaaccattgacaactcctctaactctcaacttatttgtcttcaaa 1255340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 94 - 172
Target Start/End: Complemental strand, 23124940 - 23124863
Alignment:
Q  94 tgttcctcaaaccattgacaactcctataattctcatcttatttgtcttcaaatccaaagaaaagtacttaaaacatag 172  Q
    ||||||||| |||| | ||||||||| ||| |||||||||||||||||||||||  |||| |||||||| |||||||||    
T  23124940 tgttcctcagaccactaacaactcctctaaatctcatcttatttgtcttcaaatgtaaag-aaagtactaaaaacatag 23124863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 8 - 68
Target Start/End: Original strand, 9801800 - 9801860
Alignment:
Q  8 cttcaatcttcatatctttgatccttcatgtgatgtcttgatttttcgattaacatgattt 68  Q
    |||||||||||||||| |||||||||||  |||||| ||||||| |||||| |||||||||    
T  9801800 cttcaatcttcatatccttgatccttcacatgatgttttgatttgtcgatttacatgattt 9801860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 20470729 - 20470817
Alignment:
Q  1 cattgatcttcaatcttcatatctttgatccttcatgtgatgtcttgatttttcgattaacatgatttcccactacaaagcactcaaaa 89  Q
    |||||| ||||||| |||| ||| |||||| |||||| ||||||||||||| |||||| ||||| |||  ||||| ||| |||||||||    
T  20470729 cattgaacttcaatattcacatccttgatcgttcatgcgatgtcttgatttgtcgatttacatgctttatcactataaaacactcaaaa 20470817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 106 - 201
Target Start/End: Complemental strand, 21471825 - 21471729
Alignment:
Q  106 cattgacaactcctataattctcatcttatttgtcttcaaatccaaag-aaaagtacttaaaacatagccaaaataacacatgatgttccgtcatca 201  Q
    ||||||||| |||| ||| | ||||||||||||||||||||| ||| | ||||||||| |||||||| |||||||  || |||||| || |||||||    
T  21471825 cattgacaaatcctctaaatatcatcttatttgtcttcaaatgcaaggaaaaagtactaaaaacataaccaaaatggcatatgatgctctgtcatca 21471729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 21545746 - 21545789
Alignment:
Q  1 cattgatcttcaatcttcatatctttgatccttcatgtgatgtc 44  Q
    ||||||||||||||||||||||| ||||||||||| ||||||||    
T  21545746 cattgatcttcaatcttcatatccttgatccttcacgtgatgtc 21545789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 4 - 89
Target Start/End: Original strand, 1255135 - 1255220
Alignment:
Q  4 tgatcttcaatcttcatatctttgatccttcatgtgatgtcttgatttttcgattaacatgatttcccactacaaagcactcaaaa 89  Q
    ||||||||| ||||| |||| ||||||||||||||||||| ||||||| | |||| | || ||||  || |||||| |||||||||    
T  1255135 tgatcttcattcttcgtatccttgatccttcatgtgatgttttgatttgttgatttaaataatttttcattacaaaacactcaaaa 1255220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 7 - 80
Target Start/End: Original strand, 20461573 - 20461646
Alignment:
Q  7 tcttcaatcttcatatctttgatccttcatgtgatgtcttgatttttcgattaacatgatttcccactacaaag 80  Q
    ||||||||||||||||| |||||||||||  |||||||||  |||  ||||| |||||||||| ||||| ||||    
T  20461573 tcttcaatcttcatatccttgatccttcacttgatgtcttattttgccgatttacatgatttctcactaaaaag 20461646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 7 - 75
Target Start/End: Complemental strand, 9755983 - 9755915
Alignment:
Q  7 tcttcaatcttcatatctttgatccttcatgtgatgtcttgatttttcgattaacatgatttcccacta 75  Q
    |||| |||||||||||| |||||||||||  |||||||| ||||| ||||||  ||||||||| |||||    
T  9755983 tctttaatcttcatatcgttgatccttcacatgatgtctagatttgtcgatttgcatgatttctcacta 9755915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 7 - 75
Target Start/End: Complemental strand, 9800779 - 9800711
Alignment:
Q  7 tcttcaatcttcatatctttgatccttcatgtgatgtcttgatttttcgattaacatgatttcccacta 75  Q
    |||| |||||||||||| |||||||||||  |||||||| ||||| ||||||  ||||||||| |||||    
T  9800779 tctttaatcttcatatcattgatccttcacatgatgtctagatttctcgatttgcatgatttctcacta 9800711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 130 - 178
Target Start/End: Original strand, 19140085 - 19140133
Alignment:
Q  130 tcttatttgtcttcaaatccaaagaaaagtacttaaaacatagccaaaa 178  Q
    |||| ||||||||||||| |||||||||  |||||||||||||||||||    
T  19140085 tcttttttgtcttcaaatgcaaagaaaataacttaaaacatagccaaaa 19140133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 130 - 178
Target Start/End: Original strand, 20739484 - 20739532
Alignment:
Q  130 tcttatttgtcttcaaatccaaagaaaagtacttaaaacatagccaaaa 178  Q
    |||| ||||||||||||| |||||||||  |||||||||||||||||||    
T  20739484 tcttttttgtcttcaaatgcaaagaaaataacttaaaacatagccaaaa 20739532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 94 - 178
Target Start/End: Original strand, 21545874 - 21545957
Alignment:
Q  94 tgttcctcaaaccattgacaactcctataattctcatcttatttgtcttcaaatccaaagaaaagtacttaaaacatagccaaaa 178  Q
    |||||||||||||||||||||||  | ||||| |||||||  ||||||||||    ||||||||||||| ||||||||| |||||    
T  21545874 tgttcctcaaaccattgacaacttatttaattatcatctt-gttgtcttcaatggaaaagaaaagtactaaaaacatagtcaaaa 21545957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 9 - 80
Target Start/End: Original strand, 3268893 - 3268964
Alignment:
Q  9 ttcaatcttcatatctttgatccttcatgtgatgtcttgatttttcgattaacatgatttcccactacaaag 80  Q
    |||| |||||||||  ||||||||||||||||| ||||| |||  ||||| |||||||||| ||||| ||||    
T  3268893 ttcattcttcatatacttgatccttcatgtgatatcttgttttgccgatttacatgatttctcactaaaaag 3268964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 69
Target Start/End: Original strand, 3487287 - 3487353
Alignment:
Q  3 ttgatcttcaatcttcatatctttgatccttcatgtgatgtcttgatttttcgattaacatgatttc 69  Q
    ||||| ||| ||||| ||||| |||||||||||| |||||||||| |||  ||||| ||||||||||    
T  3487287 ttgatgttcgatctttatatcattgatccttcatttgatgtcttgttttgccgattcacatgatttc 3487353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 46054891 - 46054845
Alignment:
Q  1 cattgatcttcaatcttcatatctttgatccttcatgtgatgtcttg 47  Q
    |||| ||||||||||||||||||||| |||||| |||||| ||||||    
T  46054891 cattaatcttcaatcttcatatctttaatcctttatgtgacgtcttg 46054845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 94 - 178
Target Start/End: Complemental strand, 7494751 - 7494667
Alignment:
Q  94 tgttcctcaaaccattgacaactcctataattctcatcttatttgtcttcaaatccaaagaaaagtacttaaaacatagccaaaa 178  Q
    |||||||||||||||| ||||||  | ||  ||||| | | ||||||||||| | |||||||||||||| |||  ||||||||||    
T  7494751 tgttcctcaaaccattaacaactattttatctctcaacctgtttgtcttcaagtgcaaagaaaagtactaaaagaatagccaaaa 7494667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 95 - 159
Target Start/End: Complemental strand, 9385527 - 9385463
Alignment:
Q  95 gttcctcaaaccattgacaactcctataattctcatcttatttgtcttcaaatccaaagaaaagt 159  Q
    |||| |||||||||| ||||||||  ||  |||||||||| |||||||||||| ||| |||||||    
T  9385527 gttcatcaaaccattaacaactccactatctctcatcttaattgtcttcaaatgcaaggaaaagt 9385463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 93 - 157
Target Start/End: Complemental strand, 46054739 - 46054675
Alignment:
Q  93 ttgttcctcaaaccattgacaactcctataattctcatcttatttgtcttcaaatccaaagaaaa 157  Q
    |||||||||||| || ||||||||||| ||| |  ||||||||||| |||||||| |||| ||||    
T  46054739 ttgttcctcaaatcaatgacaactcctttaaatgacatcttatttgccttcaaatacaaaaaaaa 46054675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 59; Significance: 5e-25; HSPs: 34)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 94 - 172
Target Start/End: Original strand, 33914637 - 33914715
Alignment:
Q  94 tgttcctcaaaccattgacaactcctataattctcatcttatttgtcttcaaatccaaagaaaagtacttaaaacatag 172  Q
    ||||||||||||| |||||||||||||||| |||||||||||||||||| |||| |||||||||||||| |||||||||    
T  33914637 tgttcctcaaaccgttgacaactcctataactctcatcttatttgtcttgaaatgcaaagaaaagtactaaaaacatag 33914715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 19219130 - 19219218
Alignment:
Q  1 cattgatcttcaatcttcatatctttgatccttcatgtgatgtcttgatttttcgattaacatgatttcccactacaaagcactcaaaa 89  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||| |||   |||| |||||||| | ||||||||| |||||||||    
T  19219130 cattgatcttcaatcttcatatccttgatccttcatgtgatgtcttggtttgaagatttacatgattcctcactacaaaacactcaaaa 19219218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 94 - 201
Target Start/End: Original strand, 25919539 - 25919647
Alignment:
Q  94 tgttcctcaaaccattgacaactcctataattctcatcttatttgtcttcaaatccaaagaaaagtacttaaaacatagcca-aaataacacatgatgtt 192  Q
    ||||||||||||||||||||| || | ||| ||||||||||||||||||||||| |||||||| ||||| |||||||| ||| ||||| || |||||| |    
T  25919539 tgttcctcaaaccattgacaaatcatctaactctcatcttatttgtcttcaaattcaaagaaatgtactaaaaacataaccagaaatatcatatgatgct 25919638  T
Q  193 ccgtcatca 201  Q
    || ||||||    
T  25919639 ccatcatca 25919647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 96 - 179
Target Start/End: Original strand, 1475357 - 1475441
Alignment:
Q  96 ttcctcaaaccattgacaactcctataattctcatcttatttgtcttcaaatccaaag-aaaagtacttaaaacatagccaaaat 179  Q
    |||||||||||||||| ||||||| ||| |||||||||||| | |||||||| ||||| ||||||||| ||||||||||||||||    
T  1475357 ttcctcaaaccattgaaaactcctctaactctcatcttattagacttcaaatgcaaagaaaaagtactaaaaacatagccaaaat 1475441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 3 - 79
Target Start/End: Original strand, 25919392 - 25919468
Alignment:
Q  3 ttgatcttcaatcttcatatctttgatccttcatgtgatgtcttgatttttcgattaacatgatttcccactacaaa 79  Q
    ||||||||||||||||||||| ||||||||||||||||| ||||| ||| |||||| |||||||| | |||||||||    
T  25919392 ttgatcttcaatcttcatatccttgatccttcatgtgatatcttggtttgtcgatttacatgattcctcactacaaa 25919468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 9 - 89
Target Start/End: Original strand, 33914494 - 33914574
Alignment:
Q  9 ttcaatcttcatatctttgatccttcatgtgatgtcttgatttttcgattaacatgatttcccactacaaagcactcaaaa 89  Q
    ||||| ||||||||| ||||||||||| ||||||||||||||  |||||| |||||||||| ||||||||| |||||||||    
T  33914494 ttcaaccttcatatccttgatccttcacgtgatgtcttgattcgtcgatttacatgatttctcactacaaaacactcaaaa 33914574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 97 - 202
Target Start/End: Original strand, 19219289 - 19219395
Alignment:
Q  97 tcctcaaaccattgacaactcctataattctcatcttatttgtcttcaaatccaaagaaaagtacttaaaacatagccaaaa-taacacatgatgttccg 195  Q
    |||||||||||||||||||||| |||| ||||||||||||| ||||||||  ||||||||| |||| |||||| ||| |||| || || |||||| | ||    
T  19219289 tcctcaaaccattgacaactccaataactctcatcttatttatcttcaaaagcaaagaaaaatactaaaaacacagctaaaagtatcatatgatgcttcg 19219388  T
Q  196 tcatcaa 202  Q
    |||||||    
T  19219389 tcatcaa 19219395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 96 - 179
Target Start/End: Complemental strand, 12573328 - 12573244
Alignment:
Q  96 ttcctcaaaccattgacaactcctataattctcatcttatttgtcttcaaatccaaag-aaaagtacttaaaacatagccaaaat 179  Q
    ||||||||||||||||||| || | ||| ||||||||||||||||||| ||| ||||| ||||||||| |||||||| |||||||    
T  12573328 ttcctcaaaccattgacaaatcatctaactctcatcttatttgtcttctaatgcaaagaaaaagtactaaaaacataaccaaaat 12573244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 96 - 179
Target Start/End: Complemental strand, 13549792 - 13549708
Alignment:
Q  96 ttcctcaaaccattgacaactcctataattctcatcttatttgtcttcaaatccaaag-aaaagtacttaaaacatagccaaaat 179  Q
    ||||||||||||||||||| || | ||| ||||||||||||||||||| ||| ||||| ||||||||| |||||||| |||||||    
T  13549792 ttcctcaaaccattgacaaatcatctaactctcatcttatttgtcttctaatgcaaagaaaaagtactaaaaacataaccaaaat 13549708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 19263826 - 19263909
Alignment:
Q  1 cattgatcttcaatcttcatatctttgatccttcatgtgatgtcttgatttttcgattaacatgatttcccactacaaagcact 84  Q
    ||||||||||||||||||||||| |||||||||||||||||| ||||||||  |||||  ||||||| |  |||||||| ||||    
T  19263826 cattgatcttcaatcttcatatccttgatccttcatgtgatgacttgatttgacgatttccatgattccttactacaaaacact 19263909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 7 - 85
Target Start/End: Complemental strand, 16970651 - 16970573
Alignment:
Q  7 tcttcaatcttcatatctttgatccttcatgtgatgtcttgatttttcgattaacatgatttcccactacaaagcactc 85  Q
    ||||||| ||||||||| |||||||||||  |||||||||||||| |||||| |||||||| || |||||||| |||||    
T  16970651 tcttcaaacttcatatccttgatccttcacatgatgtcttgatttgtcgatttacatgattccctactacaaaacactc 16970573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 94 - 171
Target Start/End: Complemental strand, 21017917 - 21017840
Alignment:
Q  94 tgttcctcaaaccattgacaactcctataattctcatcttatttgtcttcaaatccaaagaaaagtacttaaaacata 171  Q
    |||||||||||  |||| |||||||| ||| ||||||||||||| ||||||||| ||||||||| |||| ||||||||    
T  21017917 tgttcctcaaattattgccaactcctctaactctcatcttatttttcttcaaatgcaaagaaaaatactaaaaacata 21017840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 11475042 - 11474954
Alignment:
Q  1 cattgatcttcaatcttcatatctttgatccttcatgtgatgtcttgatttttcgattaacatgatttcccactacaaagcactcaaaa 89  Q
    |||| ||||| |||| ||||||||| ||||||||||||||||||||| |||  ||||| |||||||||| ||||| |||  ||||||||    
T  11475042 catttatcttgaatcctcatatcttcgatccttcatgtgatgtcttgttttgccgatttacatgatttctcactaaaaaagactcaaaa 11474954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 28422648 - 28422560
Alignment:
Q  1 cattgatcttcaatcttcatatctttgatccttcatgtgatgtcttgatttttcgattaacatgatttcccactacaaagcactcaaaa 89  Q
    |||||| |||||||||||||||| |  |||||||| ||||||| ||||||| |||||  |||||||||| ||||||||| || ||||||    
T  28422648 cattgaacttcaatcttcatatcctcaatccttcacgtgatgtattgatttgtcgatctacatgatttctcactacaaaacattcaaaa 28422560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 93 - 167
Target Start/End: Complemental strand, 10341836 - 10341763
Alignment:
Q  93 ttgttcctcaaaccattgacaactcctataattctcatcttatttgtcttcaaatccaaagaaaagtacttaaaa 167  Q
    ||||||||||| ||||||||||||||| |||||| |||||||||||  ||||||| || ||||||||||| ||||    
T  10341836 ttgttcctcaa-ccattgacaactcctctaattcacatcttatttgatttcaaatgcagagaaaagtactaaaaa 10341763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 94 - 172
Target Start/End: Complemental strand, 13911305 - 13911227
Alignment:
Q  94 tgttcctcaaaccattgacaactcctataattctcatcttatttgtcttcaaatccaaagaaaagtacttaaaacatag 172  Q
    |||||||||||||||||||||||| | ||  ||||  |||| |||||||||||| ||||||||| |||| |||||||||    
T  13911305 tgttcctcaaaccattgacaactcttctatctctctacttacttgtcttcaaatacaaagaaaattactaaaaacatag 13911227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 21829052 - 21829098
Alignment:
Q  1 cattgatcttcaatcttcatatctttgatccttcatgtgatgtcttg 47  Q
    ||||||||||||||||||||||| ||||| |||||||||||||||||    
T  21829052 cattgatcttcaatcttcatatccttgatacttcatgtgatgtcttg 21829098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 6 - 80
Target Start/End: Complemental strand, 26418910 - 26418836
Alignment:
Q  6 atcttcaatcttcatatctttgatccttcatgtgatgtcttgatttttcgattaacatgatttcccactacaaag 80  Q
    ||||| |||||||||||| ||||||||||||| ||||||||  |||| ||||| |||||||||| ||||| ||||    
T  26418910 atctttaatcttcatatccttgatccttcatgcgatgtcttatttttccgatttacatgatttctcactaaaaag 26418836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 90 - 167
Target Start/End: Complemental strand, 10303504 - 10303427
Alignment:
Q  90 tacttgttcctcaaaccattgacaactcctataattctcatcttatttgtcttcaaatccaaagaaaagtacttaaaa 167  Q
    ||||| || ||||||||||||||||||||| |||||| |||||||||||  |||||||  | ||||||||||| ||||    
T  10303504 tacttttttctcaaaccattgacaactcctctaattcacatcttatttgatttcaaatgtagagaaaagtactaaaaa 10303427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 93 - 153
Target Start/End: Original strand, 8402624 - 8402684
Alignment:
Q  93 ttgttcctcaaaccattgacaactcctataattctcatcttatttgtcttcaaatccaaag 153  Q
    ||||||||||||||||||||||||||| ||| |  ||||||||||| |||||||| |||||    
T  8402624 ttgttcctcaaaccattgacaactcctctaaattacatcttatttgccttcaaatgcaaag 8402684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 21018072 - 21017985
Alignment:
Q  1 cattgatcttcaatcttcatatctttgatccttcatgtgatgtcttgatttttcgattaacatgatttcccactacaaagcactcaaaa 89  Q
    ||||| |||||||| |||||||| ||||||||||| || |||||||||||| | || | |||||||||| || |||||| |||||||||    
T  21018072 cattggtcttcaat-ttcatatcattgatccttcacgtaatgtcttgatttgttgaattacatgatttctcaatacaaaacactcaaaa 21017985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 94 - 157
Target Start/End: Complemental strand, 11521180 - 11521117
Alignment:
Q  94 tgttcctcaaaccattgacaactcctataattctcatcttatttgtcttcaaatccaaagaaaa 157  Q
    ||||||||||||||||||||||||||  ||  |||||||||||| ||||||||| ||| |||||    
T  11521180 tgttcctcaaaccattgacaactcctccaacgctcatcttatttttcttcaaatgcaatgaaaa 11521117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 94 - 203
Target Start/End: Complemental strand, 25883143 - 25883033
Alignment:
Q  94 tgttcctcaaaccattgacaactcctataattctcatcttatttgtcttcaaatccaaag-aaaagtacttaaaacatagccaaaataacacatgatgtt 192  Q
    |||||||||||  ||||||||||| | | | ||||||||||||| ||||||||| ||| | |||||||||  ||| ||||||||| || || |||||| |    
T  25883143 tgttcctcaaaaaattgacaactcttctgactctcatcttatttttcttcaaatgcaatgaaaaagtactagaaatatagccaaagtatcatatgatgct 25883044  T
Q  193 ccgtcatcaat 203  Q
    | |||||||||    
T  25883043 ctgtcatcaat 25883033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 106 - 202
Target Start/End: Complemental strand, 17637131 - 17637034
Alignment:
Q  106 cattgacaactcctataattctcatcttatttgtcttcaaatccaaagaaaagtacttaaaacatagcc-aaaataacacatgatgttccgtcatcaa 202  Q
    |||| ||||||||| | ||||| |||||||||||||| || | |||||||||||| |  |||||||||| |||||  || |||||| |||||||||||    
T  17637131 catttacaactcctcttattcttatcttatttgtctttaattacaaagaaaagtaatataaacatagccaaaaatgtcatatgatgctccgtcatcaa 17637034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 20 - 89
Target Start/End: Complemental strand, 27415345 - 27415276
Alignment:
Q  20 tatctttgatccttcatgtgatgtcttgatttttcgattaacatgatttcccactacaaagcactcaaaa 89  Q
    |||| ||||||||| ||||||||||||||||  || ||| ||||||||||  |||||||| |||||||||    
T  27415345 tatccttgatcctttatgtgatgtcttgattggtctatttacatgatttcttactacaaaacactcaaaa 27415276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 94 - 134
Target Start/End: Original strand, 2729693 - 2729733
Alignment:
Q  94 tgttcctcaaaccattgacaactcctataattctcatctta 134  Q
    |||||||  ||||||||||||||||||||||||||||||||    
T  2729693 tgttccttgaaccattgacaactcctataattctcatctta 2729733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 23908190 - 23908258
Alignment:
Q  1 cattgatcttcaatcttcatatctttgatccttcatgtgatgtcttgatttttcgattaacatgatttc 69  Q
    |||||||||| |||||||||||  ||||||||||||| ||||||||| |||  || || ||||||||||    
T  23908190 cattgatcttaaatcttcatattcttgatccttcatgagatgtcttgctttgccgctttacatgatttc 23908258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 25 - 79
Target Start/End: Complemental strand, 18065968 - 18065914
Alignment:
Q  25 ttgatccttcatgtgatgtcttgatttttcgattaacatgatttcccactacaaa 79  Q
    ||||||||| ||||||||||||||||| || ||| ||||||||||  ||||||||    
T  18065968 ttgatcctttatgtgatgtcttgatttgtctatttacatgatttcttactacaaa 18065914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 26387764 - 26387810
Alignment:
Q  1 cattgatcttcaatcttcatatctttgatccttcatgtgatgtcttg 47  Q
    |||| ||||||||| ||||||||||||||||||||  ||||||||||    
T  26387764 cattaatcttcaatattcatatctttgatccttcacttgatgtcttg 26387810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 28 - 89
Target Start/End: Original strand, 2729564 - 2729625
Alignment:
Q  28 atccttcatgtgatgtcttgatttttcgattaacatgatttcccactacaaagcactcaaaa 89  Q
    |||||| | |||||||||| ||||||||||| ||| |||||  ||||||||| |||||||||    
T  2729564 atccttgacgtgatgtcttaatttttcgatttacaagatttatcactacaaaacactcaaaa 2729625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 34 - 79
Target Start/End: Original strand, 5632494 - 5632539
Alignment:
Q  34 catgtgatgtcttgatttttcgattaacatgatttcccactacaaa 79  Q
    |||||||||||||| ||| |||||| |||||||||| |||||||||    
T  5632494 catgtgatgtcttggtttgtcgatttacatgatttctcactacaaa 5632539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 94 - 179
Target Start/End: Complemental strand, 12409498 - 12409413
Alignment:
Q  94 tgttcctcaaaccattgacaactcctataattctcatcttatttgtcttcaaatccaaagaaaagtacttaaaacatagccaaaat 179  Q
    ||||| |||||||||||||||||| | ||  || ||  |||||| ||||||||| |||| ||||||||| |||| |||| ||||||    
T  12409498 tgttcttcaaaccattgacaactcttttatctcccaagttatttttcttcaaatacaaataaaagtactaaaaatatagtcaaaat 12409413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 96 - 200
Target Start/End: Complemental strand, 25188796 - 25188691
Alignment:
Q  96 ttcctcaaaccattgacaactcctataattctcatcttatttgtcttcaaatccaaagaaaagt-acttaaaacatagccaaaataacacatgatgttcc 194  Q
    |||| |||||||||| ||| |||| ||| |  | |||||||||||||||||| ||||||||| | | | |||| |||||| ||||| || |||||| |||    
T  25188796 ttccacaaaccattgtcaattcctctaaatgacctcttatttgtcttcaaatgcaaagaaaaataagtaaaaatatagcctaaatatcatatgatgatcc 25188697  T
Q  195 gtcatc 200  Q
    ||||||    
T  25188696 gtcatc 25188691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 7 - 67
Target Start/End: Original strand, 8402477 - 8402537
Alignment:
Q  7 tcttcaatcttcatatctttgatccttcatgtgatgtcttgatttttcgattaacatgatt 67  Q
    ||||||||||||||||| | |||||||||  |||||||||||| | |||||| ||| ||||    
T  8402477 tcttcaatcttcatatcctcgatccttcacttgatgtcttgatctatcgatttacacgatt 8402537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 58; Significance: 2e-24; HSPs: 37)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 8 - 89
Target Start/End: Original strand, 34864221 - 34864302
Alignment:
Q  8 cttcaatcttcatatctttgatccttcatgtgatgtcttgatttttcgattaacatgatttcccactacaaagcactcaaaa 89  Q
    ||||||||| |||||||||||||||||| ||||||||||||||| |||||| |||||||||| ||||||||| |||||||||    
T  34864221 cttcaatctccatatctttgatccttcacgtgatgtcttgatttgtcgatttacatgatttctcactacaaaacactcaaaa 34864302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 94 - 180
Target Start/End: Original strand, 5906795 - 5906881
Alignment:
Q  94 tgttcctcaaaccattgacaactcctataattctcatcttatttgtcttcaaatccaaagaaaagtacttaaaacatagccaaaata 180  Q
    ||||||||||||||||||||| |||| ||| ||||||||| ||||||||||||| |||| ||||||||| |||||||||| ||||||    
T  5906795 tgttcctcaaaccattgacaattcctctaactctcatcttgtttgtcttcaaatgcaaataaaagtactaaaaacatagcaaaaata 5906881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 95 - 171
Target Start/End: Original strand, 34864367 - 34864443
Alignment:
Q  95 gttcctcaaaccattgacaactcctataattctcatcttatttgtcttcaaatccaaagaaaagtacttaaaacata 171  Q
    ||||||||||||||||||||||||| ||| | | ||||||||||||||||||| |||||||||||||| ||||||||    
T  34864367 gttcctcaaaccattgacaactcctctaacttttatcttatttgtcttcaaatacaaagaaaagtactaaaaacata 34864443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 8 - 79
Target Start/End: Original strand, 47024691 - 47024762
Alignment:
Q  8 cttcaatcttcatatctttgatccttcatgtgatgtcttgatttttcgattaacatgatttcccactacaaa 79  Q
    ||||||||||||| || ||||||||||||| |||||||||||||||||||| |||||||||| |||||||||    
T  47024691 cttcaatcttcatgtccttgatccttcatgcgatgtcttgatttttcgatttacatgatttctcactacaaa 47024762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 15192398 - 15192311
Alignment:
Q  1 cattgatcttcaatcttcatatctttgatccttcatgtgatgtcttgatttttcgattaacatgatttcccactacaaagcactcaaaa 89  Q
    ||||| |||||||| |||||||| ||||||||||| ||||||||||| ||| |||||| |||||||||| ||||||||| |||||||||    
T  15192398 cattggtcttcaat-ttcatatccttgatccttcacgtgatgtcttggtttgtcgatttacatgatttctcactacaaaacactcaaaa 15192311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 94 - 171
Target Start/End: Original strand, 12111407 - 12111482
Alignment:
Q  94 tgttcctcaaaccattgacaactcctataattctcatcttatttgtcttcaaatccaaagaaaagtacttaaaacata 171  Q
    |||||||||||||||||||||||||| | ||||||||||| ||||||||||||| |||| ||||||||| ||||||||    
T  12111407 tgttcctcaaaccattgacaactcctct-attctcatctt-tttgtcttcaaatgcaaataaaagtactaaaaacata 12111482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 94 - 178
Target Start/End: Original strand, 1676370 - 1676454
Alignment:
Q  94 tgttcctcaaaccattgacaactcctataattctcatcttatttgtcttcaaatccaaagaaaagtacttaaaacatagccaaaa 178  Q
    |||||||||||||||||||||||||| ||  | |||||||||||||||||||||  ||||||||||||  |||| ||| ||||||    
T  1676370 tgttcctcaaaccattgacaactcctctatctttcatcttatttgtcttcaaatgtaaagaaaagtacaaaaaatataaccaaaa 1676454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 94 - 178
Target Start/End: Original strand, 1682898 - 1682982
Alignment:
Q  94 tgttcctcaaaccattgacaactcctataattctcatcttatttgtcttcaaatccaaagaaaagtacttaaaacatagccaaaa 178  Q
    |||||||||||||||||||||||||| ||  | |||||||||||||||||||||  ||||||||||||  |||| ||| ||||||    
T  1682898 tgttcctcaaaccattgacaactcctctatctttcatcttatttgtcttcaaatgtaaagaaaagtacaaaaaatataaccaaaa 1682982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 94 - 205
Target Start/End: Original strand, 25315306 - 25315418
Alignment:
Q  94 tgttcctcaaaccattgacaactcctataattctcatcttatttgtcttcaaatccaaagaaaagtact-taaaacatagccaaaataacacatgatgtt 192  Q
    ||||||||||| |||||||||||||| ||  ||||||||||||| |||||||||  |||||||||||||  |||||||| | |||||  || |||||| |    
T  25315306 tgttcctcaaagcattgacaactcctctatctctcatcttatttatcttcaaatgtaaagaaaagtactaaaaaacataactaaaatgtcatatgatgct 25315405  T
Q  193 ccgtcatcaatat 205  Q
    | |||||||||||    
T  25315406 cggtcatcaatat 25315418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 94 - 200
Target Start/End: Original strand, 9783058 - 9783165
Alignment:
Q  94 tgttcctcaaaccattgacaactcctataattctcatcttatttgtcttcaaatccaaag-aaaagtacttaaaacatagccaaaataacacatgatgtt 192  Q
    |||||||||||| ||||||||||||| ||| |||||||| ||||| ||||||||  |||| ||||||||| ||||||||| ||||||  || |||||| |    
T  9783058 tgttcctcaaactattgacaactcctctaactctcatctcatttgccttcaaatgtaaagaaaaagtactaaaaacataggcaaaatgtcatatgatgct 9783157  T
Q  193 ccgtcatc 200  Q
    | ||||||    
T  9783158 ctgtcatc 9783165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 8 - 79
Target Start/End: Complemental strand, 18898171 - 18898100
Alignment:
Q  8 cttcaatcttcatatctttgatccttcatgtgatgtcttgatttttcgattaacatgatttcccactacaaa 79  Q
    ||||||||| |||| | | ||||||||||||||||||||||||| |||||| |||||||||| |||||||||    
T  18898171 cttcaatctgcataccctggatccttcatgtgatgtcttgatttgtcgatttacatgatttctcactacaaa 18898100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 102 - 178
Target Start/End: Original strand, 1696652 - 1696726
Alignment:
Q  102 aaaccattgacaactcctataattctcatcttatttgtcttcaaatccaaagaaaagtacttaaaacatagccaaaa 178  Q
    |||||||||||||||||||||  |||||||||||||||||||||||  ||| |||||||||  ||| ||||||||||    
T  1696652 aaaccattgacaactcctatatctctcatcttatttgtcttcaaatgtaaataaaagtact--aaatatagccaaaa 1696726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 93 - 193
Target Start/End: Complemental strand, 22119687 - 22119586
Alignment:
Q  93 ttgttcctcaaaccattgacaactcctataattctcatcttatttgtcttcaaatccaaagaaaagtacttaaaacatagc-caaaataacacatgatgt 191  Q
    ||||||||||||||||||||||||||||||| |  | ||| ||||| |||||||| |||||||||  ||| ||||||||||  |||||| || |||||||    
T  22119687 ttgttcctcaaaccattgacaactcctataaataacttctaatttgccttcaaatgcaaagaaaataactaaaaacatagcataaaatatcatatgatgt 22119588  T
Q  192 tc 193  Q
    ||    
T  22119587 tc 22119586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 16 - 89
Target Start/End: Original strand, 25315165 - 25315238
Alignment:
Q  16 ttcatatctttgatccttcatgtgatgtcttgatttttcgattaacatgatttcccactacaaagcactcaaaa 89  Q
    |||||||| ||||||||||||| ||||||||||||| |||||| |||||||| | |||||||||  ||||||||    
T  25315165 ttcatatccttgatccttcatgcgatgtcttgatttgtcgatttacatgattcctcactacaaattactcaaaa 25315238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 94 - 178
Target Start/End: Complemental strand, 18898031 - 18897947
Alignment:
Q  94 tgttcctcaaaccattgacaactcctataattctcatcttatttgtcttcaaatccaaagaaaagtacttaaaacatagccaaaa 178  Q
    ||||||| ||||||||||||| || | ||  ||||| ||||||||||||||||| |||||||||||| | |||||| ||||||||    
T  18898031 tgttccttaaaccattgacaaatcatctatctctcaacttatttgtcttcaaatgcaaagaaaagtagtaaaaacacagccaaaa 18897947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 80
Target Start/End: Complemental strand, 9288405 - 9288326
Alignment:
Q  1 cattgatcttcaatcttcatatctttgatccttcatgtgatgtcttgatttttcgattaacatgatttcccactacaaag 80  Q
    ||||| ||||||||||||||||| |||||||||||  |||||||||| |||  ||||| |||||||||| ||||| ||||    
T  9288405 cattggtcttcaatcttcatatccttgatccttcacttgatgtcttgttttgccgatttacatgatttctcactaaaaag 9288326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 2 - 89
Target Start/End: Complemental strand, 23353815 - 23353730
Alignment:
Q  2 attgatcttcaatcttcatatctttgatccttcatgtgatgtcttgatttttcgattaacatgatttcccactacaaagcactcaaaa 89  Q
    ||||||||| |||||||||||| ||| ||||||||||||||||||| |||  ||||| |||||||||| ||||| |||| ||||||||    
T  23353815 attgatctttaatcttcatatccttg-tccttcatgtgatgtcttgttttgccgatttacatgatttctcactaaaaag-actcaaaa 23353730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 95 - 178
Target Start/End: Original strand, 25050141 - 25050224
Alignment:
Q  95 gttcctcaaaccattgacaactcctataattctcatcttatttgtcttcaaatccaaagaaaagtacttaaaacatagccaaaa 178  Q
    |||||||||||| |||| || | || ||| | ||||||||||||||||||||| |||| |||| |||| |||||||||||||||    
T  25050141 gttcctcaaaccgttgataatttctctaactttcatcttatttgtcttcaaatacaaataaaaatactaaaaacatagccaaaa 25050224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 7024138 - 7024184
Alignment:
Q  1 cattgatcttcaatcttcatatctttgatccttcatgtgatgtcttg 47  Q
    ||||| ||||||||||||||||||||||||||||| |||||||||||    
T  7024138 cattggtcttcaatcttcatatctttgatccttcacgtgatgtcttg 7024184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 94 - 162
Target Start/End: Complemental strand, 4953722 - 4953654
Alignment:
Q  94 tgttcctcaaaccattgacaactcctataattctcatcttatttgtcttcaaatccaaagaaaagtact 162  Q
    |||||||||||||||| ||||||||| ||  || |||||||||| ||||||||| ||||||||| ||||    
T  4953722 tgttcctcaaaccattaacaactcctttatctcacatcttatttctcttcaaatacaaagaaaaatact 4953654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 25 - 89
Target Start/End: Original strand, 17026639 - 17026703
Alignment:
Q  25 ttgatccttcatgtgatgtcttgatttttcgattaacatgatttcccactacaaagcactcaaaa 89  Q
    |||||||||||||||||||||| |||| |||||| |||||||||   |||||||| |||||||||    
T  17026639 ttgatccttcatgtgatgtcttaatttgtcgatttacatgatttatgactacaaaacactcaaaa 17026703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 9 - 67
Target Start/End: Complemental strand, 5676387 - 5676329
Alignment:
Q  9 ttcaatcttcatatctttgatccttcatgtgatgtcttgatttttcgattaacatgatt 67  Q
    ||||| ||| ||||| ||||||||||||||||||||||||||| || ||| ||||||||    
T  5676387 ttcaaacttaatatccttgatccttcatgtgatgtcttgatttatcaatttacatgatt 5676329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 125 - 171
Target Start/End: Complemental strand, 15192212 - 15192166
Alignment:
Q  125 tctcatcttatttgtcttcaaatccaaagaaaagtacttaaaacata 171  Q
    ||||||||||||||||||||||| |||||||||||||  ||||||||    
T  15192212 tctcatcttatttgtcttcaaatgcaaagaaaagtacgaaaaacata 15192166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 8 - 89
Target Start/End: Original strand, 12111253 - 12111332
Alignment:
Q  8 cttcaatcttcatatctttgatccttcatgtgatgtcttgatttttcgattaacatgatttcccactacaaagcactcaaaa 89  Q
    ||||||| |||||||||| ||||||||| |||||| |||||||| |||||| ||| || ||| ||||||||| |||||||||    
T  12111253 cttcaatattcatatctt-gatccttcacgtgatgacttgatttgtcgatttacaaga-ttctcactacaaaacactcaaaa 12111332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 7 - 92
Target Start/End: Complemental strand, 19601988 - 19601903
Alignment:
Q  7 tcttcaatcttcatatctttgatccttcatgtgatgtcttgatttttcgattaacatgatttcccactacaaagcactcaaaatac 92  Q
    ||||||||| ||||||| | |||| |||| ||||||||||||||| | |||| |||||||||| ||||| ||| | || |||||||    
T  19601988 tcttcaatcatcatatcctcgatctttcacgtgatgtcttgatttgttgatttacatgatttctcactagaaaacgctaaaaatac 19601903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 109 - 157
Target Start/End: Complemental strand, 5125629 - 5125581
Alignment:
Q  109 tgacaactcctataattctcatcttatttgtcttcaaatccaaagaaaa 157  Q
    |||||| |||| ||||||||||||||||||||||||||| |||| ||||    
T  5125629 tgacaattcctctaattctcatcttatttgtcttcaaatgcaaaaaaaa 5125581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 13064621 - 13064553
Alignment:
Q  1 cattgatcttcaatcttcatatctttgatccttcatgtgatgtcttgatttttcgattaacatgatttc 69  Q
    |||||| |||||||| || |||| ||||||||||| |||||||||||||||  | ||| ||||||||||    
T  13064621 cattgaacttcaatcgtcttatccttgatccttcacgtgatgtcttgatttgccaatttacatgatttc 13064553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 29437666 - 29437598
Alignment:
Q  1 cattgatcttcaatcttcatatctttgatccttcatgtgatgtcttgatttttcgattaacatgatttc 69  Q
    |||||| |||||||||||||||| | ||||||||| |||||||||||  ||  ||||| ||||||||||    
T  29437666 cattgaacttcaatcttcatatcctcgatccttcacgtgatgtcttgtcttgccgatttacatgatttc 29437598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 3 - 43
Target Start/End: Complemental strand, 51884795 - 51884756
Alignment:
Q  3 ttgatcttcaatcttcatatctttgatccttcatgtgatgt 43  Q
    |||||||||||| ||||||||||||||||||||||||||||    
T  51884795 ttgatcttcaat-ttcatatctttgatccttcatgtgatgt 51884756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 94 - 157
Target Start/End: Complemental strand, 27302818 - 27302755
Alignment:
Q  94 tgttcctcaaaccattgacaactcctataattctcatcttatttgtcttcaaatccaaagaaaa 157  Q
    ||||||||||||||||||||||| || ||  | ||||| ||||||||||||||| ||| |||||    
T  27302818 tgttcctcaaaccattgacaacttctctatctatcatcatatttgtcttcaaatgcaacgaaaa 27302755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 46647390 - 46647344
Alignment:
Q  1 cattgatcttcaatcttcatatctttgatccttcatgtgatgtcttg 47  Q
    |||||||||||| | |||||||||||||||| ||| |||||||||||    
T  46647390 cattgatcttcatttttcatatctttgatccctcacgtgatgtcttg 46647344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 9 - 53
Target Start/End: Original strand, 1695773 - 1695817
Alignment:
Q  9 ttcaatcttcatatctttgatccttcatgtgatgtcttgattttt 53  Q
    ||||||||||||||| |||||| ||||  ||||||||||||||||    
T  1695773 ttcaatcttcatatcgttgatcattcacatgatgtcttgattttt 1695817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 21 - 85
Target Start/End: Original strand, 9782922 - 9782986
Alignment:
Q  21 atctttgatccttcatgtgatgtcttgatttttcgattaacatgatttcccactacaaagcactc 85  Q
    |||||||||||| ||  |||||||||||||| | |||| |||||||| | ||||||||| |||||    
T  9782922 atctttgatcctccacatgatgtcttgatttgttgatttacatgattcctcactacaaaacactc 9782986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 4 - 59
Target Start/End: Original strand, 17339736 - 17339792
Alignment:
Q  4 tgatcttcaatcttcatatct-ttgatccttcatgtgatgtcttgatttttcgatta 59  Q
    ||||||||| ||| ||||||| ||||||||||||||||| ||||| ||| |||||||    
T  17339736 tgatcttcattctccatatctcttgatccttcatgtgatatcttgctttgtcgatta 17339792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 18444445 - 18444373
Alignment:
Q  1 cattgatcttcaatcttcatatctttgatccttcatgtgatgtcttgatttttcgattaacatgatttcccac 73  Q
    |||||||||||||||||  |||| | ||||||||| ||||||||||| |||   |||| |||||| |||||||    
T  18444445 cattgatcttcaatctttgtatcatcgatccttcacgtgatgtcttgttttgcagatttacatgacttcccac 18444373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 31859820 - 31859907
Alignment:
Q  1 cattgatcttcaatcttcatatctttgatccttcatgtgatgtcttgatttttcgattaacatgatttcccactacaaagcactcaaaa 89  Q
    |||||||||||||| |||||||| | |||||||||  || ||||||| |||   |||| |||||||||| ||||| |||| ||||||||    
T  31859820 cattgatcttcaatattcatatcctcgatccttcacctggtgtcttgttttgctgatttacatgatttctcactaaaaag-actcaaaa 31859907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 94 - 178
Target Start/End: Original strand, 31859955 - 31860039
Alignment:
Q  94 tgttcctcaaaccattgacaactcctataattctcatcttatttgtcttcaaatccaaagaaaagtacttaaaacatagccaaaa 178  Q
    |||||||||||| |||||||||| || ||| |  | | |||||| ||||||||| |||| ||||  ||| |||||||||||||||    
T  31859955 tgttcctcaaacaattgacaacttctctaaataaccttttatttttcttcaaatgcaaaaaaaataactaaaaacatagccaaaa 31860039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0171 (Bit Score: 53; Significance: 2e-21; HSPs: 3)
Name: scaffold0171
Description:

Target: scaffold0171; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 94 - 178
Target Start/End: Complemental strand, 6236 - 6152
Alignment:
Q  94 tgttcctcaaaccattgacaactcctataattctcatcttatttgtcttcaaatccaaagaaaagtacttaaaacatagccaaaa 178  Q
    |||||||||||||||||| ||||| ||||| ||||||||||||||| || ||||  ||||||||||||| |||||||||||||||    
T  6236 tgttcctcaaaccattgaaaactcatataactctcatcttatttgtgtttaaatggaaagaaaagtactaaaaacatagccaaaa 6152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0171; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 21593 - 21505
Alignment:
Q  1 cattgatcttcaatcttcatatctttgatccttcatgtgatgtcttgatttttcgattaacatgatttcccactacaaagcactcaaaa 89  Q
    ||||||||||||||||||||||| |||||||||||||| |||||||| ||| |||||| |||||||| | |||| |||| ||| |||||    
T  21593 cattgatcttcaatcttcatatcattgatccttcatgtaatgtcttggtttgtcgatttacatgattcctcactgcaaaacacccaaaa 21505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0171; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 6390 - 6324
Alignment:
Q  1 cattgatcttcaatcttcatatctttgatccttcatgtgatgtcttgatttttcgattaacatgattt 68  Q
    ||||| |||||||| |||||||| ||||||||||| ||||||||||||||| |||||| |||||||||    
T  6390 cattggtcttcaat-ttcatatccttgatccttcacgtgatgtcttgatttgtcgatttacatgattt 6324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 49; Significance: 4e-19; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 94 - 201
Target Start/End: Complemental strand, 15574964 - 15574857
Alignment:
Q  94 tgttcctcaaaccattgacaactcctataattctcatcttatttgtcttcaaatccaaag-aaaagtacttaaaacatagccaaaataacacatgatgtt 192  Q
    |||||||||||| |||||||| |||| ||| ||||||||||||||||||||||| ||||| ||||||||| | || |||||||||||  || ||||||||    
T  15574964 tgttcctcaaac-attgacaattcctctaaatctcatcttatttgtcttcaaatgcaaagaaaaagtactaacaagatagccaaaatgtcatatgatgtt 15574866  T
Q  193 ccgtcatca 201  Q
    | |||||||    
T  15574865 ctgtcatca 15574857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 111 - 178
Target Start/End: Original strand, 15576254 - 15576321
Alignment:
Q  111 acaactcctataattctcatcttatttgtcttcaaatccaaagaaaagtacttaaaacatagccaaaa 178  Q
    ||||||||| ||||||||||| |||||||||| |||| |||||||||||||| |||||||||||||||    
T  15576254 acaactcctctaattctcatcctatttgtctttaaattcaaagaaaagtactaaaaacatagccaaaa 15576321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 100 - 199
Target Start/End: Complemental strand, 30355360 - 30355260
Alignment:
Q  100 tcaaaccattgacaactcctataattctcatcttatttgtcttcaaatccaaagaaaagtacttaaaacatagcc-aaaataacacatgatgttccgtca 198  Q
    ||||||||||||||||| || ||| |||||||||||||  |||||||| |||  ||||||||| ||||||||||| |||||| || |||||| |||||||    
T  30355360 tcaaaccattgacaacttctctaactctcatcttatttaccttcaaatgcaagtaaaagtactaaaaacatagccaaaaatatcatatgatgctccgtca 30355261  T
Q  199 t 199  Q
    |    
T  30355260 t 30355260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 94 - 157
Target Start/End: Original strand, 13759526 - 13759589
Alignment:
Q  94 tgttcctcaaaccattgacaactcctataattctcatcttatttgtcttcaaatccaaagaaaa 157  Q
    |||||||||||||||||||||||||| ||| ||||||||||||| ||||||||| |||| ||||    
T  13759526 tgttcctcaaaccattgacaactcctctaactctcatcttatttatcttcaaatacaaataaaa 13759589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 93 - 174
Target Start/End: Original strand, 14924491 - 14924572
Alignment:
Q  93 ttgttcctcaaaccattgacaactcctataattctcatcttatttgtcttcaaatccaaagaaaagtacttaaaacatagcc 174  Q
    ||||||||||||||||||||||||||| ||| |  ||| ||||||| |||||||| |||||||||  ||| |||||||||||    
T  14924491 ttgttcctcaaaccattgacaactcctctaaattacatattatttgccttcaaatgcaaagaaaataactaaaaacatagcc 14924572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 7 - 89
Target Start/End: Original strand, 24507367 - 24507449
Alignment:
Q  7 tcttcaatcttcatatctttgatccttcatgtgatgtcttgatttttcgattaacatgatttcccactacaaagcactcaaaa 89  Q
    ||||||||||||||||| |  |||||||| ||||||||||||||| | |||| ||| |||||| ||||||||| | |||||||    
T  24507367 tcttcaatcttcatatcgtcaatccttcacgtgatgtcttgatttgttgatttacaggatttctcactacaaaactctcaaaa 24507449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 16439653 - 16439566
Alignment:
Q  1 cattgatcttcaatcttcatatctttgatccttcatgtgatgtcttgatttttcgattaacatgatttcccactacaaagcactcaaaa 89  Q
    |||||||||||| ||||||||||  ||||| ||||| |||||||||| ||||  |||| |||||||||| ||||| |||| ||||||||    
T  16439653 cattgatcttcattcttcatatccctgatctttcatctgatgtcttgtttttctgatttacatgatttctcactaaaaag-actcaaaa 16439566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 99 - 178
Target Start/End: Complemental strand, 16527925 - 16527852
Alignment:
Q  99 ctcaaaccattgacaactcctataattctcatcttatttgtcttcaaatccaaagaaaagtacttaaaacatagccaaaa 178  Q
    |||||||||  |||||||||| ||| ||||||||||||||||||      |||||||||||||| |||||||||||||||    
T  16527925 ctcaaaccaccgacaactcctctaactctcatcttatttgtctt------caaagaaaagtactaaaaacatagccaaaa 16527852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 2 - 58
Target Start/End: Complemental strand, 30355511 - 30355455
Alignment:
Q  2 attgatcttcaatcttcatatctttgatccttcatgtgatgtcttgatttttcgatt 58  Q
    |||||||||||||||||||||| | |||||||||||||| |||||| ||| ||||||    
T  30355511 attgatcttcaatcttcatatcctcgatccttcatgtgaggtcttggtttgtcgatt 30355455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 96 - 171
Target Start/End: Original strand, 16387325 - 16387400
Alignment:
Q  96 ttcctcaaaccattgacaactcctataattctcatcttatttgtcttcaaatccaaagaaaagtacttaaaacata 171  Q
    |||||||||||||||||||||| | ||| |  ||||||||| |||||||||  ||||||||| |||| ||||||||    
T  16387325 ttcctcaaaccattgacaactcatctaaattacatcttattcgtcttcaaacacaaagaaaactactaaaaacata 16387400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 33638424 - 33638498
Alignment:
Q  1 cattgatcttcaatcttcatatctttgatccttcatgtgatgtcttgatttttcgattaacatgatttcccacta 75  Q
    ||||||||||||||||||||||| |||||||||||  |||| | ||| |||  ||||| |||||||||| |||||    
T  33638424 cattgatcttcaatcttcatatccttgatccttcacttgatatattgttttgccgatttacatgatttctcacta 33638498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 12972304 - 12972372
Alignment:
Q  1 cattgatcttcaatcttcatatctttgatccttcatgtgatgtcttgatttttcgattaacatgatttc 69  Q
    ||||||||||||||||||||||| | |||| |||| || |||||||| ||||  |||| ||||||||||    
T  12972304 cattgatcttcaatcttcatatcatcgatctttcacgttatgtcttggttttctgatttacatgatttc 12972372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 94 - 157
Target Start/End: Original strand, 32930547 - 32930610
Alignment:
Q  94 tgttcctcaaaccattgacaactcctataattctcatcttatttgtcttcaaatccaaagaaaa 157  Q
    |||||| ||||||||||||||||||| ||| |  ||||||||||| |||||||| |||| ||||    
T  32930547 tgttccgcaaaccattgacaactcctctaaatgacatcttatttgccttcaaatgcaaaaaaaa 32930610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 96 - 200
Target Start/End: Complemental strand, 15998549 - 15998444
Alignment:
Q  96 ttcctcaaaccattgacaactcctataattctcatcttatttgtcttcaaatccaaagaaaa-gtacttaaaacatagccaaaataacacatgatgttcc 194  Q
    ||||||||||||| ||  |||||| ||| |||||| | ||||  |||||||| ||||||||| ||||  ||||||||||||||||  || |||||| ||     
T  15998549 ttcctcaaaccatggaacactcctctaactctcatatcattttccttcaaatgcaaagaaaacgtacaaaaaacatagccaaaatgtcatatgatgatct 15998450  T
Q  195 gtcatc 200  Q
    ||||||    
T  15998449 gtcatc 15998444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 106 - 178
Target Start/End: Original strand, 12972471 - 12972543
Alignment:
Q  106 cattgacaactcctataattctcatcttatttgtcttcaaatccaaagaaaagtacttaaaacatagccaaaa 178  Q
    |||||||||||||| ||| |  | ||||| ||| |||||||| |||||||||  ||| |||||||||||||||    
T  12972471 cattgacaactcctctaaatgacctcttagttgccttcaaatgcaaagaaaataactaaaaacatagccaaaa 12972543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 94 - 174
Target Start/End: Original strand, 20495868 - 20495948
Alignment:
Q  94 tgttcctcaaaccattgacaactcctataattctcatcttatttgtcttcaaatccaaagaaaagtacttaaaacatagcc 174  Q
    |||||||||||||||||| |||| || ||  |  | ||||| ||| |||||||| ||||||||| |||| |||||||||||    
T  20495868 tgttcctcaaaccattgataacttctctatatgacctcttaattgccttcaaatacaaagaaaattactaaaaacatagcc 20495948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0065 (Bit Score: 47; Significance: 7e-18; HSPs: 1)
Name: scaffold0065
Description:

Target: scaffold0065; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 7 - 89
Target Start/End: Complemental strand, 12434 - 12352
Alignment:
Q  7 tcttcaatcttcatatctttgatccttcatgtgatgtcttgatttttcgattaacatgatttcccactacaaagcactcaaaa 89  Q
    ||||| ||||||||||| |  |||||||| ||||||||||||||| |||||| |||||||||| ||||||||| |||||||||    
T  12434 tcttcgatcttcatatcgtcaatccttcacgtgatgtcttgatttgtcgatttacatgatttctcactacaaaacactcaaaa 12352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0386 (Bit Score: 45; Significance: 1e-16; HSPs: 4)
Name: scaffold0386
Description:

Target: scaffold0386; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 25 - 89
Target Start/End: Original strand, 13014 - 13078
Alignment:
Q  25 ttgatccttcatgtgatgtcttgatttttcgattaacatgatttcccactacaaagcactcaaaa 89  Q
    ||||||||||||||||||||||||||| |||||| |||||||| | ||||||||| |||||||||    
T  13014 ttgatccttcatgtgatgtcttgatttgtcgatttacatgattcctcactacaaaacactcaaaa 13078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0386; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 97 - 201
Target Start/End: Original strand, 8787 - 8892
Alignment:
Q  97 tcctcaaaccattgacaactcctataattctcatcttatttgtcttcaaatccaaagaaaagtacttaaaacatagcc-aaaataacacatgatgttccg 195  Q
    ||||| |||||||||||| |||| |||  |||||||||||| |||| ||||  ||| ||||||||| |||| ||| || |||||| || ||||||||||     
T  8787 tcctctaaccattgacaaatcctctaaccctcatcttatttttcttaaaatgaaaataaaagtactaaaaaaataaccaaaaatatcatatgatgttcca 8886  T
Q  196 tcatca 201  Q
    ||||||    
T  8887 tcatca 8892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0386; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 25 - 89
Target Start/End: Original strand, 8652 - 8716
Alignment:
Q  25 ttgatccttcatgtgatgtcttgatttttcgattaacatgatttcccactacaaagcactcaaaa 89  Q
    |||||||||||| | |||||||||||| |||||| |||||||| | ||||||||| || ||||||    
T  8652 ttgatccttcattttatgtcttgatttgtcgatttacatgattcctcactacaaaacattcaaaa 8716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0386; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 101 - 171
Target Start/End: Original strand, 13153 - 13223
Alignment:
Q  101 caaaccattgacaactcctataattctcatcttatttgtcttcaaatccaaagaaaagtacttaaaacata 171  Q
    ||||||||||| || |||| ||| |||||||||||||||||| | ||  ||| ||||||||| ||||||||    
T  13153 caaaccattgaaaaatcctctaactctcatcttatttgtcttaatatgaaaataaaagtactaaaaacata 13223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0650 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: scaffold0650
Description:

Target: scaffold0650; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 9 - 78
Target Start/End: Original strand, 5696 - 5765
Alignment:
Q  9 ttcaatcttcatatctttgatccttcatgtgatgtcttgatttttcgattaacatgatttcccactacaa 78  Q
    ||||||||||||||| | |||||||||||||||||||| |||| || ||| |||||||||| ||||||||    
T  5696 ttcaatcttcatatcctcgatccttcatgtgatgtctttatttgtcaatttacatgatttctcactacaa 5765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0337 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0337
Description:

Target: scaffold0337; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 7 - 89
Target Start/End: Complemental strand, 1998 - 1916
Alignment:
Q  7 tcttcaatcttcatatctttgatccttcatgtgatgtcttgatttttcgattaacatgatttcccactacaaagcactcaaaa 89  Q
    ||||||||||||||||| |  |||||||| ||||||||||||||| | |||| ||| |||||| ||||||||| | |||||||    
T  1998 tcttcaatcttcatatcgtcaatccttcacgtgatgtcttgatttgttgatttacaggatttctcactacaaaactctcaaaa 1916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 125 - 202
Target Start/End: Complemental strand, 447014 - 446936
Alignment:
Q  125 tctcatcttatttgtcttcaaatccaaa-gaaaagtacttaaaacatagccaaaataacacatgatgttccgtcatcaa 202  Q
    |||||||||||||||||||||||  ||| |||||||||| |||||||||| |||||| || |||||| || ||||||||    
T  447014 tctcatcttatttgtcttcaaatgtaaaggaaaagtactaaaaacatagcaaaaatatcatatgatgctctgtcatcaa 446936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0188 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0188
Description:

Target: scaffold0188; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 97 - 174
Target Start/End: Original strand, 27032 - 27109
Alignment:
Q  97 tcctcaaaccattgacaactcctataa-ttctcatcttatttgtcttcaaatccaaagaaaagtacttaaaacatagcc 174  Q
    ||||||| |||| |||||||| | ||| |||| ||||||||| ||||||||| |||||||||||||| |||||||||||    
T  27032 tcctcaatccatagacaactcttgtaacttct-atcttatttatcttcaaatgcaaagaaaagtactaaaaacatagcc 27109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 27 - 75
Target Start/End: Original strand, 228131 - 228179
Alignment:
Q  27 gatccttcatgtgatgtcttgatttttcgattaacatgatttcccacta 75  Q
    ||||||||| ||||||||||||||| |||||| |||||||||| |||||    
T  228131 gatccttcacgtgatgtcttgatttgtcgatttacatgatttctcacta 228179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University