View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19803_high_11 (Length: 381)

Name: NF19803_high_11
Description: NF19803
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19803_high_11
NF19803_high_11
[»] chr4 (5 HSPs)
chr4 (17-369)||(29980026-29980386)
chr4 (183-352)||(29978835-29979007)
chr4 (183-334)||(39268803-39268954)
chr4 (237-334)||(39267740-39267837)
chr4 (59-131)||(39268231-39268303)
[»] chr8 (6 HSPs)
chr8 (17-352)||(43539106-43539444)
chr8 (183-341)||(43539752-43539911)
chr8 (183-352)||(59553-59723)
chr8 (183-350)||(35675617-35675785)
chr8 (185-332)||(60168-60312)
chr8 (17-55)||(35675882-35675920)
[»] chr3 (3 HSPs)
chr3 (221-361)||(26652595-26652735)
chr3 (183-351)||(27823731-27823900)
chr3 (61-104)||(26652465-26652508)
[»] chr7 (5 HSPs)
chr7 (183-352)||(8484158-8484328)
chr7 (183-357)||(8077545-8077723)
chr7 (237-340)||(8075498-8075601)
chr7 (281-351)||(7258277-7258347)
chr7 (270-352)||(48646050-48646132)
[»] chr1 (1 HSPs)
chr1 (271-341)||(17589681-17589751)


Alignment Details
Target: chr4 (Bit Score: 199; Significance: 1e-108; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 17 - 369
Target Start/End: Original strand, 29980026 - 29980386
Alignment:
Q  17 caggttaggccttttcttttggactctgcagtggttttgct-------ttgtgatgattaacttatctagtttttcatctttaaacccaaaagaataaca 109  Q
    |||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29980026 caggttaggccttttcttttggactctgcagtggttttgctgctgtatttgtgatgattaacttatctagtttttcatctttaaacccaaaagaataaca 29980125  T
Q  110 tctttatgaagatagagatgaatattcttttttctggnnnnnnnnnnn-atcatgaataagaaatannnnnnnnactttcaatttggttcctataattga 208  Q
    ||||||||||||||||||||||||||||||||| |              |||||||||||||||||        |||||||  |||||||||||||||||    
T  29980126 tctttatgaagatagagatgaatattctttttttttttggtttttttttatcatgaataagaaatattttttttactttcagattggttcctataattga 29980225  T
Q  209 cacatcagtaggtaacagaattttttaa-ggtaaggactaaactgataacaaatatatatattcagggactattttgtagtttatcctgagttggggact 307  Q
    ||||| |||||||||||||||||||||| ||||| |||||||||||||||||||||| | |||||||||||||||||||||||||| |||||||||||||    
T  29980226 cacataagtaggtaacagaattttttaacggtaaagactaaactgataacaaatatacacattcagggactattttgtagtttatcttgagttggggact 29980325  T
Q  308 aaagtgacagcgaggtgtaaagtcagggaccaaaacgactatttattcattttttaatcctt 369  Q
    ||||||||||||||||||||||||| ||| ||||  ||||||||| ||||||||||||||||    
T  29980326 aaagtgacagcgaggtgtaaagtca-ggatcaaagtgactatttactcattttttaatcctt 29980386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 183 - 352
Target Start/End: Complemental strand, 29979007 - 29978835
Alignment:
Q  183 actttcaatttggttcctataattgacacatcagtaggtaacagaattttttaa-ggtaaggactaaactgataacaaatatatatattcagggactatt 281  Q
    |||||||||||||| ||| ||||| |||||||   || ||||| || ||||||| |||||||| |||||||||||||||| ||||| ||||| |||||||    
T  29979007 actttcaatttggtccctctaattaacacatcgtgagttaacaaaaatttttaacggtaaggattaaactgataacaaatgtatattttcagagactatt 29978908  T
Q  282 tt-gtagtttatcctgagttgggg-actaaagtgacagcgaggtgtaaagtcagggaccaaaacgactattta 352  Q
    || ||| || ||| | ||| |||| |||||||||||| ||| ||||||||||||| ||||||| |||||||||    
T  29978907 ttggtatttaatcataagtcggggaactaaagtgacaacgaagtgtaaagtcaggaaccaaaatgactattta 29978835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 183 - 334
Target Start/End: Original strand, 39268803 - 39268954
Alignment:
Q  183 actttcaatttggttcctataattgacacatcagtaggtaacagaattttttaaggtaaggactaaactgataacaaatatatatattcagggactattt 282  Q
    |||||||||||||| | ||  ||||||||||||  | |||||||| ||||| | |||||  ||||||||||||||| | ||| |  |||||| ||| | |    
T  39268803 actttcaatttggtccttaggattgacacatcaccatgtaacagagtttttaacggtaaaaactaaactgataacagagatacacgttcaggaactttat 39268902  T
Q  283 tgtagtttatcctgagttggggactaaagtgacagcgaggtgtaaagtcagg 334  Q
    |||| ||||| | |||| || |||||||||||||||||| |||||| |||||    
T  39268903 tgtattttattcagagtcggagactaaagtgacagcgagatgtaaaatcagg 39268954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 237 - 334
Target Start/End: Complemental strand, 39267837 - 39267740
Alignment:
Q  237 ggtaaggactaaactgataacaaatatatatattcagggactattttgtagtttatcctgagttggggactaaagtgacagcgaggtgtaaagtcagg 334  Q
    |||||||||||||||||||||| || || | ||||||| ||| | ||||| |||||||| | | || |||| |||||||||||||||| |||||||||    
T  39267837 ggtaaggactaaactgataacagatgtacacattcaggcactttattgtattttatcctcaatcggcgactgaagtgacagcgaggtgcaaagtcagg 39267740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 59 - 131
Target Start/End: Original strand, 39268231 - 39268303
Alignment:
Q  59 tgtgatgattaacttatctagtttttcatctttaaacccaaaagaataacatctttatgaagatagagatgaa 131  Q
    |||||||||||||||| |  |  ||||||||||||||||||||||| |||||||| |||||||| ||||||||    
T  39268231 tgtgatgattaacttaacaggcgtttcatctttaaacccaaaagaacaacatcttcatgaagatggagatgaa 39268303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 184; Significance: 2e-99; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 17 - 352
Target Start/End: Complemental strand, 43539444 - 43539106
Alignment:
Q  17 caggttaggccttttcttttggactctgcagtggttttgct-------ttgtgatgattaacttatctagtttttcatctttaaacccaaaagaataaca 109  Q
    |||||||||||||||||||||||||||| ||||||||| ||       ||| |||||||||||||||||||||||||||||||||||||||||||||| |    
T  43539444 caggttaggccttttcttttggactctgtagtggtttttctgttgtgtttgcgatgattaacttatctagtttttcatctttaaacccaaaagaataaaa 43539345  T
Q  110 tctttatgaagatagagatgaatattcttttttctggnnnnnnnnnnnatcatgaataagaaatannnnnnnnactttcaatttggttcctataattgac 209  Q
    |||||||||||||||||||||||||||||||||||||           |||||||||||||||||        |||||||||||||| ||||||||||||    
T  43539344 tctttatgaagatagagatgaatattcttttttctggtttttt-----atcatgaataagaaatattttttttactttcaatttggtccctataattgac 43539250  T
Q  210 acatcagtaggtaacagaattttttaa-ggtaaggactaaactgataacaaatatatatattcagggactattttgtagtttatcctgagttggggacta 308  Q
    ||||| |||| |||||||||||||||| |||||||| ||||||||||||| ||||| | |||||||||||||||||||||||||||||||| ||||||||    
T  43539249 acatcggtagttaacagaattttttaacggtaaggattaaactgataacagatatacacattcagggactattttgtagtttatcctgagtcggggacta 43539150  T
Q  309 aagtgacagcgaggtgtaaagtcagggaccaaaacgactattta 352  Q
    |||||||||||||||| ||||| ||||||||||  |||||||||    
T  43539149 aagtgacagcgaggtgcaaagttagggaccaaagtgactattta 43539106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 183 - 341
Target Start/End: Original strand, 43539752 - 43539911
Alignment:
Q  183 actttcaatttggttcctataattgacacatcagtaggtaacagaattttttaa-ggtaaggactaaactgataacaaatatatatattcagggactatt 281  Q
    |||||||||||||| ||||| ||||||||||||  || ||||| |  ||||||| |||||||||||||||||||||| || |  ||||||| ||||||||    
T  43539752 actttcaatttggtccctatgattgacacatcatgagttaacataggtttttaacggtaaggactaaactgataacagatgtgcatattcaaggactatt 43539851  T
Q  282 ttgtagtttatcctgagttggggactaaagtgacagcgaggtgtaaagtcagggaccaaa 341  Q
    |||||||||||||||||| |||||||||| ||||||||||||| ||||||||||||||||    
T  43539852 ttgtagtttatcctgagtaggggactaaaatgacagcgaggtgcaaagtcagggaccaaa 43539911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 183 - 352
Target Start/End: Complemental strand, 59723 - 59553
Alignment:
Q  183 actttcaatttggttcctataattgacacatcagtaggtaacagaattttttaag-gtaaggactaaactgataacaaatatatatattcagggactatt 281  Q
    |||||||||||||| ||||| ||||||||||||   | ||||| ||||||||||  ||||||||||||||||| ||| || ||   ||||||||||||||    
T  59723 actttcaatttggtccctatgattgacacatcatcggttaacataattttttaattgtaaggactaaactgatgacagatctacccattcagggactatt 59624  T
Q  282 ttgtagtttatcctgagttggggactaaagtgacagcgaggtgtaaagtcagggaccaaaacgactattta 352  Q
    ||||||||||||||||||  |||||||||||||||||||||||||||||||||||| |||  |||||||||    
T  59623 ttgtagtttatcctgagtcagggactaaagtgacagcgaggtgtaaagtcagggactaaagtgactattta 59553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 183 - 350
Target Start/End: Complemental strand, 35675785 - 35675617
Alignment:
Q  183 actttcaatttggttcctataattgacacatcagtaggtaacagaattttttaa-ggtaaggactaaactgataacaaatatatatattcagggactatt 281  Q
    ||||| ||||||||  |||||||||||||||||  |  |||||||| ||||||| |||||||| | ||||||||||| || || |||||||  || ||||    
T  35675785 acttttaatttggtctctataattgacacatcatcaattaacagaaatttttaacggtaaggattgaactgataacagatgtacatattcaaagaatatt 35675686  T
Q  282 ttgtagtttatcctgagttggggactaaagtgacagcgaggtgtaaagtcagggaccaaaacgactatt 350  Q
    |||||||||||||| ||||| |||||||||||| ||||||||| |||||||  |||||||| |||||||    
T  35675685 ttgtagtttatcctaagttgaggactaaagtgatagcgaggtgcaaagtcaacgaccaaaatgactatt 35675617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 185 - 332
Target Start/End: Original strand, 60168 - 60312
Alignment:
Q  185 tttcaatttggttcctataattgacacatcagtaggtaacagaattttttaa-ggtaaggactaaactgataacaaatatatatattcagggactatttt 283  Q
    |||||||||||| ||||| | ||||||||||| || |||||||| ||||||| ||||| ||||| ||||||||||  | || | |||||||||||||| |    
T  60168 tttcaatttggtccctatgaatgacacatcagcagttaacagaaatttttaaaggtaaagactagactgataacaggtctacacattcagggactattct 60267  T
Q  284 gtagtttatcctgagttggggactaaagtgacagcgaggtgtaaagtca 332  Q
    ||||||||||||||    ||||| ||||||||| ||||||| |||||||    
T  60268 gtagtttatcctga----gggaccaaagtgacaacgaggtgcaaagtca 60312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 17 - 55
Target Start/End: Complemental strand, 35675920 - 35675882
Alignment:
Q  17 caggttaggccttttcttttggactctgcagtggttttg 55  Q
    ||||||||||||||||||||| ||||||| |||||||||    
T  35675920 caggttaggccttttcttttgaactctgcggtggttttg 35675882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 65; Significance: 2e-28; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 221 - 361
Target Start/End: Original strand, 26652595 - 26652735
Alignment:
Q  221 taacagaattttttaaggtaaggactaaactgataacaaatatatatattcagggactattttgtagtttatcctgagttggggactaaagtgacagcga 320  Q
    ||||||||||||| |  ||||||||||||||||||||| | ||| | ||||| ||||||||||||| |||||||| |||  |||||||||||||||||||    
T  26652595 taacagaatttttaacagtaaggactaaactgataacagagatacacattcatggactattttgtattttatcctaagtcagggactaaagtgacagcga 26652694  T
Q  321 ggtgtaaagtcagggaccaaaacgactatttattcattttt 361  Q
    | || ||||||||||||| ||  ||||||||| ||| ||||    
T  26652695 gatgcaaagtcagggacccaagtgactatttactcaatttt 26652735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 183 - 351
Target Start/End: Complemental strand, 27823900 - 27823731
Alignment:
Q  183 actttcaatttggttcctataattgacacatcagtaggtaacagaattttttaa-ggtaaggactaaactgataacaaatatatatattcagggactatt 281  Q
    |||||||||||| | | ||||||||||||||||  |  |||||||| ||||||| |||||| ||||||| ||||||| | ||| | |||||  |||| |     
T  27823900 actttcaatttgatccttataattgacacatcaccatttaacagaagtttttaacggtaagaactaaaccgataacagagatagacattcaaagacttta 27823801  T
Q  282 ttgtagtttatcctgagttggggactaaagtgacagcgaggtgtaaagtcagggaccaaaacgactattt 351  Q
    ||||| |||||||||  | || || |||| ||||||  ||||||||| ||| |||  |||| ||||||||    
T  27823800 ttgtattttatcctggatcggagattaaaatgacagttaggtgtaaaatcaaggattaaaatgactattt 27823731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 61 - 104
Target Start/End: Original strand, 26652465 - 26652508
Alignment:
Q  61 tgatgattaacttatctagtttttcatctttaaacccaaaagaa 104  Q
    ||||||||||||||  | ||||||||||||||||||||||||||    
T  26652465 tgatgattaacttacatggtttttcatctttaaacccaaaagaa 26652508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 59; Significance: 7e-25; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 183 - 352
Target Start/End: Original strand, 8484158 - 8484328
Alignment:
Q  183 actttcaatttggttcctataattgacacatcagtaggtaacagaattttttaa-ggtaaggactaaactgataacaaatatatatattcagggactatt 281  Q
    ||||||||||| || ||||| ||||||||||| |  | ||||||||  |||||| |||||| |||||||||||||||||| || | ||||| ||||||||    
T  8484158 actttcaatttagtccctatgattgacacatctgcggttaacagaaaattttaacggtaagtactaaactgataacaaatttacacattcatggactatt 8484257  T
Q  282 ttgtagtttatcctgagttggggactaaagtgacagcgaggtgtaaagtcagggaccaaaacgactattta 352  Q
    || ||||||||| | ||| ||| |||| ||||||| ||||||| ||| |||| |||||||  |||||||||    
T  8484258 ttatagtttatcttaagtcgggaactagagtgacaacgaggtgcaaaatcagagaccaaagtgactattta 8484328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 183 - 357
Target Start/End: Original strand, 8077545 - 8077723
Alignment:
Q  183 actttcaatttggttcctataattgacacatcagtaggtaacagaattttttaagg----taaggactaaactgataacaaatatatatattcagggact 278  Q
    ||||| ||||||||  |||| |||||||||||||| | ||||| ||||||| || |    |||||||||||| ||||||| || || | ||||||  | |    
T  8077545 acttttaatttggtctctatgattgacacatcagtcgttaacataatttttcaacggttataaggactaaacagataacagatctacacattcagaaatt 8077644  T
Q  279 attttgtagtttatcctgagttggggactaaagtgacagcgaggtgtaaagtcagggaccaaaacgactatttattcat 357  Q
    ||||| || |||||||||||| || ||||||||||||| |||||||||||||  |||||||||| ||||||||| ||||    
T  8077645 attttataatttatcctgagtcggagactaaagtgacaacgaggtgtaaagttggggaccaaaatgactatttactcat 8077723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 237 - 340
Target Start/End: Complemental strand, 8075601 - 8075498
Alignment:
Q  237 ggtaaggactaaactgataacaaatatatatattcagggactattttgtagtttatcctgagttggggactaaagtgacagcgaggtgtaaagtcaggga 336  Q
    |||||||||||||||||||||| || || | ||||| ||| |||||||||||||||| | ||| || ||||||||| ||| |  |||||||||||| |||    
T  8075601 ggtaaggactaaactgataacagatctacacattcaaggattattttgtagtttatcataagtcggagactaaagtaacaacatggtgtaaagtcaagga 8075502  T
Q  337 ccaa 340  Q
    ||||    
T  8075501 ccaa 8075498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 281 - 351
Target Start/End: Complemental strand, 7258347 - 7258277
Alignment:
Q  281 tttgtagtttatcctgagttggggactaaagtgacagcgaggtgtaaagtcagggaccaaaacgactattt 351  Q
    |||||| || |||||||||| |||||  | |||||| ||||||||| ||||||||||||||  ||||||||    
T  7258347 tttgtatttaatcctgagttagggacctatgtgacaacgaggtgtagagtcagggaccaaagtgactattt 7258277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 270 - 352
Target Start/End: Complemental strand, 48646132 - 48646050
Alignment:
Q  270 tcagggactattttgtagtttatcctgagttggggactaaagtgacagcgaggtgtaaagtcagggaccaaaacgactattta 352  Q
    |||||||||  |||||| || |||||||||  |||||  | |||||||||||||| | ||||||||||||||  |||||||||    
T  48646132 tcagggacttatttgtatttaatcctgagtcagggacctatgtgacagcgaggtgcatagtcagggaccaaagtgactattta 48646050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 271 - 341
Target Start/End: Original strand, 17589681 - 17589751
Alignment:
Q  271 cagggactattttgtagtttatcctgagttggggactaaagtgacagcgaggtgtaaagtcagggaccaaa 341  Q
    |||||||||||||||| ||||||| ||||| | ||| |  ||| |||||||||| ||||||||||||||||    
T  17589681 cagggactattttgtattttatccggagttagagaccattgtgtcagcgaggtgcaaagtcagggaccaaa 17589751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University