View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19803_high_13 (Length: 375)
Name: NF19803_high_13
Description: NF19803
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19803_high_13 |
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Alignment Details
Target: chr7 (Bit Score: 225; Significance: 1e-124; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 141 - 365
Target Start/End: Original strand, 24968814 - 24969038
Alignment:
| Q |
141 |
ttaactaacaaaagaatgtgttgtgttgtgtactcacttgaactacacgtaacacatttattttgtacctttatagttacacgtattacacgtcatggtc |
240 |
Q |
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| T |
24968814 |
ttaactaacaaaagaatgtgttgtgttgtgtactcacttgaactacacgtaacacatttattttgtacctttatagttacacgtattacacgtcatggtc |
24968913 |
T |
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| Q |
241 |
atgctatgctgctatgagtttcttatttaattactataataccactacctcatttttcctacaaaatagaaatagaaaattcatgcaagatttatttccc |
340 |
Q |
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| T |
24968914 |
atgctatgctgctatgagtttcttatttaattactataataccactacctcatttttcctacaaaatagaaatagaaaattcatgcaagatttatttccc |
24969013 |
T |
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| Q |
341 |
tattttccccgttttcaatgttgat |
365 |
Q |
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| T |
24969014 |
tattttccccgttttcaatgttgat |
24969038 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 1 - 121
Target Start/End: Original strand, 24968662 - 24968782
Alignment:
| Q |
1 |
aaaaaacaagttacacaagtataagaagtacctcgttttacatgtgaagaaaaaccaccaaaaacaaaagcatcctagtaccaaaccaaagtactagaaa |
100 |
Q |
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| T |
24968662 |
aaaaaacaagttacacaagcataagtagtacctcgttttacatgtgaaggaagatcatcaaacacaaaagcatcctagtaccaaaccaaagtactagaaa |
24968761 |
T |
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| Q |
101 |
atagaacagtctcttagatgt |
121 |
Q |
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| T |
24968762 |
atagaacagtctcttagatgt |
24968782 |
T |
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