View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19803_high_14 (Length: 350)
Name: NF19803_high_14
Description: NF19803
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19803_high_14 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 271; Significance: 1e-151; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 12 - 334
Target Start/End: Original strand, 25484392 - 25484714
Alignment:
| Q |
12 |
cagagaggagaagcaatttcaccccaacttctacaagcaattcaacagtcacgcatttctatcgttgtcttttccgaagattatgcttcttcaacatggt |
111 |
Q |
| |
|
|||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||| |||||||||||||||||||||||| |
|
|
| T |
25484392 |
cagaaaggagaagccatttcaccccaacttctacaagcaattcaacagtcacgcatttctatcgttgttttctccaaagattatgcttcttcaacatggt |
25484491 |
T |
|
| Q |
112 |
gtttggatgaaatggctgctattaacgaatctagaataaatttgaaacaagttgttttccctgttttttatgatgtcgatccatctcatgtcaaaaaaca |
211 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
25484492 |
gtttggatgaaatggctgctattagcgaatctagaataaatttgaaacaagttgttttccctgttttttatgatgttgatccatctcatgtcaaaaaaca |
25484591 |
T |
|
| Q |
212 |
aaatggagtatatgagaatgcatttcttttacacactgagacattcaagcatgattcaggcaaggttgctcgatggaggacgacaatgactgatttgggt |
311 |
Q |
| |
|
||||||||||||||||||||||||| ||||||| |||||| ||||||||||| |||||||||||||||||||||||||||| ||||||||| |||||||| |
|
|
| T |
25484592 |
aaatggagtatatgagaatgcatttgttttacatactgaggcattcaagcataattcaggcaaggttgctcgatggaggacaacaatgacttatttgggt |
25484691 |
T |
|
| Q |
312 |
ggaacagctggttgggatgttag |
334 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
25484692 |
ggaacagctggttgggatgttag |
25484714 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 158; E-Value: 5e-84
Query Start/End: Original strand, 17 - 334
Target Start/End: Complemental strand, 25436442 - 25436125
Alignment:
| Q |
17 |
aggagaagcaatttcaccccaacttctacaagcaattcaacagtcacgcatttctatcgttgtcttttccgaagattatgcttcttcaacatggtgtttg |
116 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||| || |||||| ||| |||| |||| || || |||||||||||| ||||||||||||||| |
|
|
| T |
25436442 |
aggagaagccatttcaccccaacttctacaagcaattcgacggtcacgggtttgtatcattgttttctcaagagattatgcttcatcaacatggtgtttg |
25436343 |
T |
|
| Q |
117 |
gatgaaatggctgctattaacgaatctagaataaatttgaaacaagttgttttccctgttttttatgatgtcgatccatctcatgtcaaaaaacaaaatg |
216 |
Q |
| |
|
|||||||||||||||||| | |||||||||| ||| |||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
25436342 |
gatgaaatggctgctattgatgaatctagaaaaaaattgaaacaagttgtattccctgttttttatgatgtcgatccatctcatgttcgaaaacaaaatg |
25436243 |
T |
|
| Q |
217 |
gagtatatgagaatgcatttcttttacacactgagacattcaagcatgattcaggcaaggttgctcgatggaggacgacaatgactgatttgggtggaac |
316 |
Q |
| |
|
|||| ||||||||||||||| ||||||||||| || ||| || |||||| ||||||||||| |||||| || ||||||||| |||||| |||| | |
|
|
| T |
25436242 |
gagtgtatgagaatgcatttgttttacacactaagcaatttggaaataattcagacaaggttgctcaatggagaacaacaatgactcatttggctggatc |
25436143 |
T |
|
| Q |
317 |
agctggttgggatgttag |
334 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
25436142 |
tgctggttgggatgttag |
25436125 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 27 - 264
Target Start/End: Complemental strand, 25478914 - 25478677
Alignment:
| Q |
27 |
atttcaccccaacttctacaagcaattcaacagtcacgcatttctatcgttgtcttttccgaagattatgcttcttcaacatggtgtttggatgaaatgg |
126 |
Q |
| |
|
||||||| |||||||| ||| ||||||||||| || || ||||||| |||||||| || |||||||||||| ||||| |||||||||||||||||| |
|
|
| T |
25478914 |
atttcactccaacttcgacaggcaattcaacaatcgcgtctttctatagttgtcttctcagaagattatgctggctcaacttggtgtttggatgaaatga |
25478815 |
T |
|
| Q |
127 |
ctgctattaacgaatctagaataaatttgaaacaagttgttttccctgttttttatgatgtcgatccatctcatgtcaaaaaacaaaatggagtatatga |
226 |
Q |
| |
|
||| |||| ||| | | ||| | |||||| ||||||| |||||||| ||| |||||||||||||||||||| ||||||||||||| ||||| |
|
|
| T |
25478814 |
ctgttattgccgactgccttacaaaactaaaacaaattgttttacctgttttctattatgtcgatccatctcatgtccgaaaacaaaatggaaagtatga |
25478715 |
T |
|
| Q |
227 |
gaatgcatttcttttacacactgagacattcaagcatg |
264 |
Q |
| |
|
|||||| ||| |||||||||| ||||||||||| |||| |
|
|
| T |
25478714 |
gaatgcctttgttttacacacggagacattcaaacatg |
25478677 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 67 - 248
Target Start/End: Original strand, 25442496 - 25442677
Alignment:
| Q |
67 |
tttctatcgttgtcttttccgaagattatgcttcttcaacatggtgtttggatgaaatggctgctattaacgaatctagaataaatttgaaacaagttgt |
166 |
Q |
| |
|
|||||||| ||||||| ||| ||||||||||||| ||||||||||||||||||||||||||||||||| | ||||| || | || |||||||||||||| |
|
|
| T |
25442496 |
tttctatcattgtcttctccaaagattatgcttcatcaacatggtgtttggatgaaatggctgctattgatgaatccagtagaagattgaaacaagttgt |
25442595 |
T |
|
| Q |
167 |
tttccctgttttttatgatgtcgatccatctcatgtcaaaaaacaaaatggagtatatgagaatgcatttcttttacacact |
248 |
Q |
| |
|
||| ||||| || ||||| | |||||||||||||| | |||| | ||||| |||||| |||| ||| ||||||||||| |
|
|
| T |
25442596 |
ttttcctgtcttctatgacattgatccatctcatgtaagaaaaagatctggagcgtatgaggatgcctttgttttacacact |
25442677 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 67 - 331
Target Start/End: Original strand, 25636688 - 25636952
Alignment:
| Q |
67 |
tttctatcgttgtcttttccgaagattatgcttcttcaacatggtgtttggatgaaatggctgctattaacgaatctagaataaatttgaaacaagttgt |
166 |
Q |
| |
|
|||||||| ||||||| ||| ||||||||||||| ||||||||||||||||||||||||||||||||| | ||||| || | || ||||||| |||||| |
|
|
| T |
25636688 |
tttctatcattgtcttctccaaagattatgcttcatcaacatggtgtttggatgaaatggctgctattgatgaatccagtagaagattgaaactagttgt |
25636787 |
T |
|
| Q |
167 |
tttccctgttttttatgatgtcgatccatctcatgtcaaaaaacaaaatggagtatatgagaatgcatttcttttacacactgagacattcaagcatgat |
266 |
Q |
| |
|
||| ||||| || ||||| | |||||||||||||| | |||| | ||||| |||||| |||| ||| ||||||||| ||| ||||| || ||| |
|
|
| T |
25636788 |
ttttcctgtcttctatgacattgatccatctcatgtaagaaaaagatctggagcgtatgaggatgcctttgttttacacaacgagctgttcaaacacgat |
25636887 |
T |
|
| Q |
267 |
tcaggcaaggttgctcgatggaggacgacaatgactgatttgggtggaacagctggttgggatgt |
331 |
Q |
| |
|
||| || ||||||| |||||||| | | |||||| ||||| |||| |||| || |||||||| |
|
|
| T |
25636888 |
ccagacagagttgctcaatggaggagggccatgacttctttggctggatcagcaggctgggatgt |
25636952 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 273 - 334
Target Start/End: Original strand, 25442693 - 25442754
Alignment:
| Q |
273 |
aaggttgctcgatggaggacgacaatgactgatttgggtggaacagctggttgggatgttag |
334 |
Q |
| |
|
||||||| || ||||||||| | |||||| |||||| |||| ||||||||||||||||||| |
|
|
| T |
25442693 |
aaggttgatcaatggaggacagctatgacttatttggctggatcagctggttgggatgttag |
25442754 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 36 - 202
Target Start/End: Complemental strand, 35177905 - 35177739
Alignment:
| Q |
36 |
caacttctacaagcaattcaacagtcacgcatttctatcgttgtcttttccgaagattatgcttcttcaacatggtgtttggatgaaatggctgctatta |
135 |
Q |
| |
|
||||||| |||||||||| | | ||||| || |||||||||||||| || ||| |||||| ||||||||||||||||| ||||||||| ||||| |
|
|
| T |
35177905 |
caacttcgacaagcaattgcaaattcacggatatctatcgttgtcttctcagaaagatatgctgagtcaacatggtgtttggaagaaatggctactattg |
35177806 |
T |
|
| Q |
136 |
acgaatctagaataaatttgaaacaagttgttttccctgttttttatgatgtcgatccatctcatgt |
202 |
Q |
| |
|
|||| | | | ||||| |||| |||||||||||||||||||||| || ||||||||||||| |
|
|
| T |
35177805 |
ttgaatgtcgtagcaatttcttacaaactgttttccctgttttttatgatatcaatccatctcatgt |
35177739 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 153 - 202
Target Start/End: Complemental strand, 35105837 - 35105788
Alignment:
| Q |
153 |
ttgaaacaagttgttttccctgttttttatgatgtcgatccatctcatgt |
202 |
Q |
| |
|
||||||||| |||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
35105837 |
ttgaaacaaactgttttccctgttttttatgatgttgatccatctcatgt |
35105788 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 164 - 202
Target Start/End: Complemental strand, 35183775 - 35183737
Alignment:
| Q |
164 |
tgttttccctgttttttatgatgtcgatccatctcatgt |
202 |
Q |
| |
|
|||||||||| |||||||||||| ||||||||||||||| |
|
|
| T |
35183775 |
tgttttccctattttttatgatgccgatccatctcatgt |
35183737 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 165 - 202
Target Start/End: Complemental strand, 35169485 - 35169448
Alignment:
| Q |
165 |
gttttccctgttttttatgatgtcgatccatctcatgt |
202 |
Q |
| |
|
||||||||||||||||||||| | |||||||||||||| |
|
|
| T |
35169485 |
gttttccctgttttttatgatattgatccatctcatgt |
35169448 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 27 - 128
Target Start/End: Complemental strand, 500297 - 500196
Alignment:
| Q |
27 |
atttcaccccaacttctacaagcaattcaacagtcacgcatttctatcgttgtcttttccgaagattatgcttcttcaacatggtgtttggatgaaatgg |
126 |
Q |
| |
|
|||||| | |||||||| || ||||||| ||| ||||| ||||||| || | || || ||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
500297 |
atttcaactcaacttcttcatgcaattcgacaatcacgtgtttctattattattttctcaaaagattatgcttcatcaacatggtgtttggatgaaatgg |
500198 |
T |
|
| Q |
127 |
ct |
128 |
Q |
| |
|
|| |
|
|
| T |
500197 |
ct |
500196 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University