View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19803_high_30 (Length: 219)
Name: NF19803_high_30
Description: NF19803
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19803_high_30 |
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| [»] chr3 (1 HSPs) |
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| [»] chr1 (1 HSPs) |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 16 - 219
Target Start/End: Complemental strand, 8178577 - 8178374
Alignment:
| Q |
16 |
atgcaaaagcttataatatttttctactcaaaaattgcaggcaacaaattgataggtactcgggttgcctctggttatattaatttcggtgtcatattta |
115 |
Q |
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| T |
8178577 |
atgcaaaagcttataatatttttctactaaaaaattgcaggcaacaaattgatagttactcgggttgcctctggttatattaatttcggtgtcatattta |
8178478 |
T |
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| Q |
116 |
aataacctatgcagtataacttcagattgtagacgcgtttggtgtatgacactaacaaaacaccgacacatattgttacaatcaattattctattttctc |
215 |
Q |
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| T |
8178477 |
aataacctatgcggtataaattcagattgtagacgcgtttggtgtatgacactaacaaaacaccgacacatattgttacaatcaattattctattttctc |
8178378 |
T |
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| Q |
216 |
aaat |
219 |
Q |
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|||| |
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| T |
8178377 |
aaat |
8178374 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 108; Significance: 2e-54; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 18 - 219
Target Start/End: Complemental strand, 39830593 - 39830388
Alignment:
| Q |
18 |
gcaaaagcttataatatttt-tctactcaaaaattgcaggcaacaaattgataggtactcgggttgcctctggttatattaatttcggtgtcatatttaa |
116 |
Q |
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|||||||||| || |||||| ||||||||||||| |||||||||||||| ||||||| |||| ||||||| ||||||||||||| |||||||| |||| |
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| T |
39830593 |
gcaaaagcttgtagtattttgtctactcaaaaatggcaggcaacaaatttgtaggtacaagggtagcctctgattatattaatttcagtgtcatacttaa |
39830494 |
T |
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| Q |
117 |
ataacctatgcag---tataacttcagattgtagacgcgtttggtgtatgacactaacaaaacaccgacacatattgttacaatcaattattctattttc |
213 |
Q |
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| T |
39830493 |
ataaccaatgtagcggtaacacttcagattgaagacgcgtttggtgtatgacactaacaaaacaccgacacatattgcttcaatcaattattctcttttc |
39830394 |
T |
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| Q |
214 |
tcaaat |
219 |
Q |
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|||||| |
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| T |
39830393 |
tcaaat |
39830388 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 179 - 219
Target Start/End: Complemental strand, 9483437 - 9483397
Alignment:
| Q |
179 |
cgacacatattgttacaatcaattattctattttctcaaat |
219 |
Q |
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| T |
9483437 |
cgacacatatggttacattcaattattctattttctcaaat |
9483397 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 175 - 212
Target Start/End: Original strand, 20571405 - 20571442
Alignment:
| Q |
175 |
acaccgacacatattgttacaatcaattattctatttt |
212 |
Q |
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| T |
20571405 |
acaccgacacatatagttaaaatcaattattctatttt |
20571442 |
T |
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