View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19803_high_32 (Length: 206)

Name: NF19803_high_32
Description: NF19803
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19803_high_32
NF19803_high_32
[»] chr4 (1 HSPs)
chr4 (1-196)||(38116272-38116458)
[»] chr8 (2 HSPs)
chr8 (1-196)||(45113687-45113896)
chr8 (167-196)||(11288320-11288349)
[»] chr5 (1 HSPs)
chr5 (105-196)||(1015885-1015973)
[»] chr3 (2 HSPs)
chr3 (27-103)||(22776232-22776309)
chr3 (95-140)||(22776157-22776202)
[»] chr7 (1 HSPs)
chr7 (1-59)||(34351875-34351933)


Alignment Details
Target: chr4 (Bit Score: 164; Significance: 7e-88; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 164; E-Value: 7e-88
Query Start/End: Original strand, 1 - 196
Target Start/End: Complemental strand, 38116458 - 38116272
Alignment:
Q  1 tcatcaattccaacaacaacaaccatccaaaaaacgcaccagcagttgctccaaaccaatacctaaaccggccacaccatagctgccacaaccaaacaga 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38116458 tcatcaattccaacaacaacaaccatccaaaaaacgcaccagcagttgctccaaaccaatacctaaaccggccacaccatagctgccacaaccaaacaga 38116359  T
Q  101 aactgctgctaacatcagcagtctcagccgaaccagcccagccgccaccgacatctttctcaaagacctgctcctacccttttcaactatgatgat 196  Q
    |||||||||||||||||||||||||         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38116358 aactgctgctaacatcagcagtctc---------agcccagccgccaccgacatctttctcaaagacctgctcctacccttttcaactatgatgat 38116272  T

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Target: chr8 (Bit Score: 80; Significance: 1e-37; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 1 - 196
Target Start/End: Complemental strand, 45113896 - 45113687
Alignment:
Q  1 tcatcaattccaacaacaacaaccatccaaaaaacgcaccagcagttgctccaaaccaatacctaaaccggccacaccatagctgccacaaccaaacaga 100  Q
    |||||||||||||||||||| |||  | |||||| ||||||||||||| |||||||||||||||||| |||||||||| |||||||||||||||||||||    
T  45113896 tcatcaattccaacaacaaccacc--caaaaaaatgcaccagcagttgttccaaaccaatacctaaatcggccacaccctagctgccacaaccaaacaga 45113799  T
Q  101 aactgctg-------------------ctaacatcagcagtctcagccgaaccagcccagccgccaccgacatctttctcaaagacctgctcctaccctt 181  Q
    ||| ||||                   |||||| |||||||||||||||||| ||||||    |||| |||||||||||||||||| |||||||||||||    
T  45113798 aacagctgcacacgcagctagcagctactaacagcagcagtctcagccgaactagccca---accactgacatctttctcaaagacttgctcctaccctt 45113702  T
Q  182 ttcaactatgatgat 196  Q
    |||||||||||||||    
T  45113701 ttcaactatgatgat 45113687  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 167 - 196
Target Start/End: Complemental strand, 11288349 - 11288320
Alignment:
Q  167 cctgctcctacccttttcaactatgatgat 196  Q
    ||||||||||||||||||||||||||||||    
T  11288349 cctgctcctacccttttcaactatgatgat 11288320  T

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Target: chr5 (Bit Score: 54; Significance: 3e-22; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 105 - 196
Target Start/End: Complemental strand, 1015973 - 1015885
Alignment:
Q  105 gctgctaacatcagcagtctcagccgaaccagcccagccgccaccgacatctttctcaaagacctgctcctacccttttcaactatgatgat 196  Q
    |||||||||| || |||||||||||||||||||||||||   || ||||| ||||||||||||||||||||||||||||||  |||||||||    
T  1015973 gctgctaacagcaacagtctcagccgaaccagcccagcc---acagacatatttctcaaagacctgctcctacccttttcagttatgatgat 1015885  T

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Target: chr3 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 27 - 103
Target Start/End: Complemental strand, 22776309 - 22776232
Alignment:
Q  27 ccaaaaaacgcaccagcagttgctccaaaccaatacctaaaccggccacacca-tagctgccacaaccaaacagaaac 103  Q
    ||||||||| ||||||||| || |||||||||| || ||||||||| || ||  ||||||||||||||||||||||||    
T  22776309 ccaaaaaacacaccagcagctgttccaaaccaaaacgtaaaccggcaacgcccctagctgccacaaccaaacagaaac 22776232  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 95 - 140
Target Start/End: Complemental strand, 22776202 - 22776157
Alignment:
Q  95 aacagaaactgctgctaacatcagcagtctcagccgaaccagccca 140  Q
    ||||| ||| |||||||||| || ||||||||||||||||||||||    
T  22776202 aacagcaacagctgctaacagcaacagtctcagccgaaccagccca 22776157  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 34351875 - 34351933
Alignment:
Q  1 tcatcaattccaacaacaacaaccatccaaaaaacgcaccagcagttgctccaaaccaa 59  Q
    ||||||||||||||| ||||||||| ||||||| | ||||| || |||||||| |||||    
T  34351875 tcatcaattccaacagcaacaaccacccaaaaaccacaccaacatttgctccacaccaa 34351933  T

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