View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19803_high_5 (Length: 439)
Name: NF19803_high_5
Description: NF19803
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19803_high_5 |
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Alignment Details
Target: chr5 (Bit Score: 320; Significance: 1e-180; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 12 - 424
Target Start/End: Complemental strand, 37430773 - 37430361
Alignment:
| Q |
12 |
tgtataggtaaagcattaagatttgtcaaaccagaacaccagaaaagatttgtcaaaccaggacaggaaaacactaatagtccaatgcacaagacaagac |
111 |
Q |
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| T |
37430773 |
tgtataggtaaagcattaagatttgtcaaaccagaacaccagaaaagatttgtcaaaccaggacaggaaaacactaatagtccaatgcacaagacaagac |
37430674 |
T |
|
| Q |
112 |
taccacaatttcaaatacaaagagaataagacatatatgcaatattcttttcccttattcattcttcttatcaactactatatgtttgcaatcaatgctt |
211 |
Q |
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| T |
37430673 |
taccacaatttcaaatacaaagagaataagacatatatgcaatattcttttccctgattcattctgcttatcaactactatatggttgcaatcaatgctt |
37430574 |
T |
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| Q |
212 |
tgtaggtcatgcttctgcatctttcaaacctcttcataacctctatagatataggctaaaataatcaaatccaaaatcctaaacaagagagtataatttc |
311 |
Q |
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| T |
37430573 |
agtaggtcatgcttctgcatctttcaaacctcttcataacatctatagatagaggctaaaataatcaaataaaaaatcctcaagaagagagtatagtttc |
37430474 |
T |
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| Q |
312 |
ctctaaatggggtccttttgttttctatttccttatcttgcctttcaccnnnnnnngttgatgctgcttactcattttacttcctatacattctcaatgt |
411 |
Q |
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| T |
37430473 |
ctctaaatggggtccttttgttttctatttccttatcttgcctttcacttgttcttgttgatgctgctaactctttttacttcctatacattttcaatgt |
37430374 |
T |
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| Q |
412 |
ccaaccatgatga |
424 |
Q |
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| T |
37430373 |
gcaagcatcatga |
37430361 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 312 - 424
Target Start/End: Complemental strand, 37698509 - 37698397
Alignment:
| Q |
312 |
ctctaaatggggtccttttgttttctatttccttatcttgcctttcaccnnnnnnngttgatgctgcttactcattttacttcctatacattctcaatgt |
411 |
Q |
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| T |
37698509 |
ctctaaatggggtccttttttattctattgccttattttgcctttcactttttcttgttgttgttgcttactcattttacttcctacacactctcattat |
37698410 |
T |
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| Q |
412 |
ccaaccatgatga |
424 |
Q |
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||||||| |||| |
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| T |
37698409 |
gcaaccatcatga |
37698397 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 373 - 407
Target Start/End: Complemental strand, 37441599 - 37441565
Alignment:
| Q |
373 |
tgctgcttactcattttacttcctatacattctca |
407 |
Q |
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| T |
37441599 |
tgctgcttactcattttacttcctatactttctca |
37441565 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 368 - 416
Target Start/End: Complemental strand, 37595990 - 37595942
Alignment:
| Q |
368 |
gttgatgctgcttactcattttacttcctatacattctcaatgtccaac |
416 |
Q |
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|||| ||||||||||||||||||||||||| || |||||| ||| |||| |
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| T |
37595990 |
gttgttgctgcttactcattttacttcctacactttctcattgtgcaac |
37595942 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 376 - 418
Target Start/End: Complemental strand, 14554711 - 14554669
Alignment:
| Q |
376 |
tgcttactcattttacttcctatacattctcaatgtccaacca |
418 |
Q |
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| T |
14554711 |
tgcttactcattttacttcctatactttctcattgtgcaacca |
14554669 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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