View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19803_high_8 (Length: 402)
Name: NF19803_high_8
Description: NF19803
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19803_high_8 |
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Alignment Details
Target: chr7 (Bit Score: 111; Significance: 6e-56; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 1 - 122
Target Start/End: Complemental strand, 42535604 - 42535482
Alignment:
| Q |
1 |
gcagttttctataaacacatgttaaaaagagacattagagcaaaaaa-tcttcactaactaagaaacatatatacttacatatgcgagtgatttgtatat |
99 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
42535604 |
gcagttttctataaacacatgttaaaaagagacattagagcaaaaaaatcttcactaactaagaaacatatatacttacatatgcgagtgatttgaatat |
42535505 |
T |
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| Q |
100 |
taaaaaagattgaagacttatgg |
122 |
Q |
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||||||||||||||||||||||| |
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| T |
42535504 |
taaaaaagattgaagacttatgg |
42535482 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 195 - 296
Target Start/End: Complemental strand, 42535415 - 42535314
Alignment:
| Q |
195 |
tctctaatatcccaaattttcagtttaaacgtactattaattgaaagtgaaaaaagaaaaggttacagctacaattcaatgaaaaggtgaggaataatat |
294 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42535415 |
tctctaatatcccaaattttcagtttaaacgtactattaattgaaagtgaaaaaagaaaaggttacagctacaattcaatgaaaaggtgaggaataatat |
42535316 |
T |
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| Q |
295 |
tc |
296 |
Q |
| |
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|| |
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| T |
42535315 |
tc |
42535314 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 288 - 386
Target Start/End: Complemental strand, 42535131 - 42535033
Alignment:
| Q |
288 |
ataatattcagatcaaccaagctaacagcaaatggttagtgtacaccttggacgtctcattgtcacctgtcatgatcatccaacttggattttggacat |
386 |
Q |
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||||||||||||||||| |||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42535131 |
ataatattcagatcaacgaagctaacagcagatggttagtgtgcaccttggacgtctcattgtcacctgtcatgatcatccaacttggattttggacat |
42535033 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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