View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19803_high_9 (Length: 400)

Name: NF19803_high_9
Description: NF19803
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19803_high_9
NF19803_high_9
[»] chr5 (7 HSPs)
chr5 (156-381)||(37430790-37431015)
chr5 (93-140)||(32872785-32872832)
chr5 (92-144)||(36562936-36562988)
chr5 (102-142)||(16971985-16972025)
chr5 (102-140)||(11954577-11954615)
chr5 (93-142)||(31748473-31748522)
chr5 (92-136)||(32284713-32284757)
[»] chr7 (13 HSPs)
chr7 (92-143)||(29723809-29723860)
chr7 (92-141)||(2008718-2008767)
chr7 (92-140)||(12007073-12007121)
chr7 (92-140)||(15325527-15325575)
chr7 (92-143)||(37352246-37352297)
chr7 (92-137)||(28249460-28249505)
chr7 (92-140)||(33845178-33845226)
chr7 (105-141)||(46881051-46881087)
chr7 (92-142)||(32777592-32777642)
chr7 (92-137)||(21103148-21103193)
chr7 (92-141)||(43807699-43807748)
chr7 (92-140)||(26749140-26749188)
chr7 (92-140)||(27570479-27570527)
[»] chr4 (13 HSPs)
chr4 (92-140)||(39158241-39158289)
chr4 (92-140)||(51255882-51255930)
chr4 (92-140)||(18316073-18316121)
chr4 (92-140)||(38519929-38519977)
chr4 (102-139)||(21014143-21014180)
chr4 (102-143)||(55266171-55266212)
chr4 (92-140)||(29227130-29227178)
chr4 (93-140)||(22813609-22813656)
chr4 (92-141)||(26600085-26600134)
chr4 (92-140)||(5386508-5386556)
chr4 (92-140)||(14443334-14443382)
chr4 (92-140)||(50506524-50506572)
chr4 (92-136)||(54000834-54000878)
[»] chr3 (8 HSPs)
chr3 (92-140)||(29525999-29526047)
chr3 (92-142)||(34307426-34307476)
chr3 (92-140)||(4494124-4494172)
chr3 (102-137)||(27168572-27168607)
chr3 (92-137)||(39713927-39713972)
chr3 (92-140)||(31104800-31104848)
chr3 (96-140)||(32145873-32145917)
chr3 (92-140)||(53681187-53681235)
[»] chr8 (11 HSPs)
chr8 (93-140)||(33451452-33451499)
chr8 (92-140)||(1068742-1068790)
chr8 (102-141)||(42652739-42652778)
chr8 (92-140)||(15716863-15716911)
chr8 (92-140)||(33107754-33107802)
chr8 (92-140)||(34435624-34435672)
chr8 (92-140)||(44091022-44091070)
chr8 (108-139)||(36874001-36874032)
chr8 (93-142)||(11134720-11134769)
chr8 (92-140)||(26027032-26027080)
chr8 (92-140)||(28772013-28772061)
[»] chr2 (10 HSPs)
chr2 (102-140)||(26480977-26481015)
chr2 (307-353)||(41265762-41265808)
chr2 (92-142)||(44239172-44239222)
chr2 (92-141)||(2427885-2427934)
chr2 (92-145)||(11965929-11965982)
chr2 (92-141)||(37731086-37731135)
chr2 (92-136)||(14877125-14877169)
chr2 (92-140)||(31578570-31578618)
chr2 (92-140)||(37316702-37316750)
chr2 (92-140)||(36587358-36587406)
[»] chr1 (9 HSPs)
chr1 (102-140)||(4213218-4213256)
chr1 (92-136)||(7918953-7918997)
chr1 (92-140)||(47642494-47642542)
chr1 (92-140)||(48983555-48983603)
chr1 (92-143)||(38878785-38878836)
chr1 (92-140)||(27742745-27742793)
chr1 (92-140)||(40439727-40439775)
chr1 (92-140)||(42468728-42468776)
chr1 (92-141)||(48858959-48859008)
[»] chr6 (7 HSPs)
chr6 (102-142)||(17182244-17182284)
chr6 (302-353)||(34260975-34261026)
chr6 (102-140)||(1287059-1287097)
chr6 (92-140)||(33712456-33712504)
chr6 (93-140)||(5739651-5739698)
chr6 (92-142)||(8645444-8645494)
chr6 (92-137)||(18064980-18065025)
[»] scaffold0201 (1 HSPs)
scaffold0201 (92-141)||(8608-8657)
[»] scaffold0618 (1 HSPs)
scaffold0618 (92-140)||(8840-8888)
[»] scaffold0184 (1 HSPs)
scaffold0184 (92-140)||(13444-13492)
[»] scaffold0078 (1 HSPs)
scaffold0078 (92-140)||(59352-59400)
[»] scaffold0034 (1 HSPs)
scaffold0034 (98-138)||(101790-101830)


Alignment Details
Target: chr5 (Bit Score: 222; Significance: 1e-122; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 156 - 381
Target Start/End: Complemental strand, 37431015 - 37430790
Alignment:
Q  156 acagtatattgtgatattagtaacaatgaaactgaatgactaattatttcatttggtttataatttacaaagtactatttgcatatgcttattcaaatta 255  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37431015 acagtatattgtgatattagtaacaatgaaactgaatgactaattatttcatttggtttataatttacaaagtactatttgcatatgcttattcaaatta 37430916  T
Q  256 aatacttctaaaatttagcatgcagcataaatttatcagtaacaaatatggaatgtgaatgtaaatgtcttaatttatacacgaaacaagattaatttgg 355  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37430915 aatacttctaaaatttagcatgcagcataaatttatcagtaacaaatatggaatgtgaatgtaaatgtcttaatttatacacgaaacaagattaatttgg 37430816  T
Q  356 aaattgtgatcataggaattgttcta 381  Q
    |||||||||||||||||||| |||||    
T  37430815 aaattgtgatcataggaattattcta 37430790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 93 - 140
Target Start/End: Complemental strand, 32872832 - 32872785
Alignment:
Q  93 ttgtccaacaagttgtcacaataaagggttgttcaaataacattgctc 140  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||    
T  32872832 ttgtccaacaagttgtcacaagaaagggttgttcaaataacattgctc 32872785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 92 - 144
Target Start/End: Complemental strand, 36562988 - 36562936
Alignment:
Q  92 gttgtccaacaagttgtcacaataaagggttgttcaaataacattgctcattg 144  Q
    |||||||||||||||||| ||| |||||||||||||||||||||| |||||||    
T  36562988 gttgtccaacaagttgtcccaacaaagggttgttcaaataacattcctcattg 36562936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 102 - 142
Target Start/End: Complemental strand, 16972025 - 16971985
Alignment:
Q  102 aagttgtcacaataaagggttgttcaaataacattgctcat 142  Q
    |||||||||||||||| | ||||||||||||||||||||||    
T  16972025 aagttgtcacaataaatgattgttcaaataacattgctcat 16971985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 102 - 140
Target Start/End: Original strand, 11954577 - 11954615
Alignment:
Q  102 aagttgtcacaataaagggttgttcaaataacattgctc 140  Q
    ||||||||| |||||| ||||||||||||||||||||||    
T  11954577 aagttgtcaaaataaatggttgttcaaataacattgctc 11954615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 93 - 142
Target Start/End: Original strand, 31748473 - 31748522
Alignment:
Q  93 ttgtccaacaagttgtcacaataaagggttgttcaaataacattgctcat 142  Q
    |||||||| |||||||||||| ||| | ||||||||||||||| ||||||    
T  31748473 ttgtccaataagttgtcacaaaaaatgattgttcaaataacatcgctcat 31748522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 92 - 136
Target Start/End: Complemental strand, 32284757 - 32284713
Alignment:
Q  92 gttgtccaacaagttgtcacaataaagggttgttcaaataacatt 136  Q
    |||||||||||||||||| ||| ||| ||||||| ||||||||||    
T  32284757 gttgtccaacaagttgtctcaacaaaaggttgtttaaataacatt 32284713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 44; Significance: 6e-16; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 92 - 143
Target Start/End: Complemental strand, 29723860 - 29723809
Alignment:
Q  92 gttgtccaacaagttgtcacaataaagggttgttcaaataacattgctcatt 143  Q
    |||||||||||||||||||||||||| |||||| ||||||||||||||||||    
T  29723860 gttgtccaacaagttgtcacaataaatggttgtacaaataacattgctcatt 29723809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 92 - 141
Target Start/End: Complemental strand, 2008767 - 2008718
Alignment:
Q  92 gttgtccaacaagttgtcacaataaagggttgttcaaataacattgctca 141  Q
    |||||||||||||||||||||  ||| |||||||||||||||||||||||    
T  2008767 gttgtccaacaagttgtcacataaaatggttgttcaaataacattgctca 2008718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 92 - 140
Target Start/End: Complemental strand, 12007121 - 12007073
Alignment:
Q  92 gttgtccaacaagttgtcacaataaagggttgttcaaataacattgctc 140  Q
    ||||||||||||||||||||||||||  ||||| |||||||||||||||    
T  12007121 gttgtccaacaagttgtcacaataaatagttgtacaaataacattgctc 12007073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 92 - 140
Target Start/End: Complemental strand, 15325575 - 15325527
Alignment:
Q  92 gttgtccaacaagttgtcacaataaagggttgttcaaataacattgctc 140  Q
    |||||||||||||||||||||  ||| ||||||||||||||||||||||    
T  15325575 gttgtccaacaagttgtcacataaaaaggttgttcaaataacattgctc 15325527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 92 - 143
Target Start/End: Original strand, 37352246 - 37352297
Alignment:
Q  92 gttgtccaacaagttgtcacaataaagggttgttcaaataacattgctcatt 143  Q
    ||||||||||||||||  |||| ||| |||||||||||||||||||||||||    
T  37352246 gttgtccaacaagttggtacaagaaatggttgttcaaataacattgctcatt 37352297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 92 - 137
Target Start/End: Complemental strand, 28249505 - 28249460
Alignment:
Q  92 gttgtccaacaagttgtcacaataaagggttgttcaaataacattg 137  Q
    ||||||||| |||||||||||| ||| |||||||||||||||||||    
T  28249505 gttgtccaaaaagttgtcacaagaaatggttgttcaaataacattg 28249460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 92 - 140
Target Start/End: Original strand, 33845178 - 33845226
Alignment:
Q  92 gttgtccaacaagttgtcacaataaagggttgttcaaataacattgctc 140  Q
    |||||||||||| ||||||||  ||| ||||||||||||||||||||||    
T  33845178 gttgtccaacaaattgtcacatgaaaaggttgttcaaataacattgctc 33845226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 105 - 141
Target Start/End: Original strand, 46881051 - 46881087
Alignment:
Q  105 ttgtcacaataaagggttgttcaaataacattgctca 141  Q
    |||||| ||||||||||||||||||||||||||||||    
T  46881051 ttgtcataataaagggttgttcaaataacattgctca 46881087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 92 - 142
Target Start/End: Complemental strand, 32777642 - 32777592
Alignment:
Q  92 gttgtccaacaagttgtcacaataaagggttgttcaaataacattgctcat 142  Q
    ||||||||||||||| | |||| ||| | ||||||||||||||||||||||    
T  32777642 gttgtccaacaagttattacaagaaaagattgttcaaataacattgctcat 32777592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 92 - 137
Target Start/End: Original strand, 21103148 - 21103193
Alignment:
Q  92 gttgtccaacaagttgtcacaataaagggttgttcaaataacattg 137  Q
    ||||||||||||||| |||||| ||| ||||||||||||| |||||    
T  21103148 gttgtccaacaagttatcacaagaaatggttgttcaaatatcattg 21103193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 92 - 141
Target Start/End: Complemental strand, 43807748 - 43807699
Alignment:
Q  92 gttgtccaacaagttgtcacaataaagggttgttcaaataacattgctca 141  Q
    ||||| |||||| |||||| || |||||||||||||||||||| ||||||    
T  43807748 gttgtacaacaaattgtcataagaaagggttgttcaaataacactgctca 43807699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 92 - 140
Target Start/End: Original strand, 26749140 - 26749188
Alignment:
Q  92 gttgtccaacaagttgtcacaataaagggttgttcaaataacattgctc 140  Q
    ||||||||| |  ||||||||| ||| ||||||||||||||||||||||    
T  26749140 gttgtccaaaagattgtcacaaaaaatggttgttcaaataacattgctc 26749188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 92 - 140
Target Start/End: Original strand, 27570479 - 27570527
Alignment:
Q  92 gttgtccaacaagttgtcacaataaagggttgttcaaataacattgctc 140  Q
    ||||||||| ||||||||||||||||  ||||| || ||||||||||||    
T  27570479 gttgtccaataagttgtcacaataaatagttgtacagataacattgctc 27570527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 92 - 140
Target Start/End: Original strand, 39158241 - 39158289
Alignment:
Q  92 gttgtccaacaagttgtcacaataaagggttgttcaaataacattgctc 140  Q
    ||||||||| |||||||||||||||| ||||||||||||||||||||||    
T  39158241 gttgtccaataagttgtcacaataaatggttgttcaaataacattgctc 39158289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 92 - 140
Target Start/End: Original strand, 51255882 - 51255930
Alignment:
Q  92 gttgtccaacaagttgtcacaataaagggttgttcaaataacattgctc 140  Q
    |||||||||||||||||||||||||| |||||| |||||||||||||||    
T  51255882 gttgtccaacaagttgtcacaataaatggttgtacaaataacattgctc 51255930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 92 - 140
Target Start/End: Original strand, 18316073 - 18316121
Alignment:
Q  92 gttgtccaacaagttgtcacaataaagggttgttcaaataacattgctc 140  Q
    ||||||||||||||||||| || ||| ||||||||||||||||||||||    
T  18316073 gttgtccaacaagttgtcataagaaatggttgttcaaataacattgctc 18316121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 92 - 140
Target Start/End: Original strand, 38519929 - 38519977
Alignment:
Q  92 gttgtccaacaagttgtcacaataaagggttgttcaaataacattgctc 140  Q
    |||||||||||||||||||||||||| |||| | |||||||||||||||    
T  38519929 gttgtccaacaagttgtcacaataaatggttatacaaataacattgctc 38519977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 102 - 139
Target Start/End: Original strand, 21014143 - 21014180
Alignment:
Q  102 aagttgtcacaataaagggttgttcaaataacattgct 139  Q
    |||||||||||||||| |||||||||||||||||||||    
T  21014143 aagttgtcacaataaaaggttgttcaaataacattgct 21014180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 102 - 143
Target Start/End: Original strand, 55266171 - 55266212
Alignment:
Q  102 aagttgtcacaataaagggttgttcaaataacattgctcatt 143  Q
    ||||| |||||||||||| |||||||||||||||||||||||    
T  55266171 aagttatcacaataaaggattgttcaaataacattgctcatt 55266212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 92 - 140
Target Start/End: Complemental strand, 29227178 - 29227130
Alignment:
Q  92 gttgtccaacaagttgtcacaataaagggttgttcaaataacattgctc 140  Q
    |||||||||||| ||||||||  ||| ||||||||||||||||||||||    
T  29227178 gttgtccaacaaattgtcacataaaaaggttgttcaaataacattgctc 29227130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 93 - 140
Target Start/End: Complemental strand, 22813656 - 22813609
Alignment:
Q  93 ttgtccaacaagttgtcacaataaagggttgttcaaataacattgctc 140  Q
    ||||||||||||||||||||| |||  |||||| ||||||||||||||    
T  22813656 ttgtccaacaagttgtcacaagaaaaagttgtttaaataacattgctc 22813609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 92 - 141
Target Start/End: Complemental strand, 26600134 - 26600085
Alignment:
Q  92 gttgtccaacaagttgtcacaataaagggttgttcaaataacattgctca 141  Q
    |||||||||||| ||||||||  |||  ||||||||||||||||||||||    
T  26600134 gttgtccaacaaattgtcacataaaaatgttgttcaaataacattgctca 26600085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 92 - 140
Target Start/End: Original strand, 5386508 - 5386556
Alignment:
Q  92 gttgtccaacaagttgtcacaataaagggttgttcaaataacattgctc 140  Q
    |||||| || |||||||||||| ||| ||||||||||||| ||||||||    
T  5386508 gttgtctaaaaagttgtcacaagaaatggttgttcaaatatcattgctc 5386556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 92 - 140
Target Start/End: Original strand, 14443334 - 14443382
Alignment:
Q  92 gttgtccaacaagttgtcacaataaagggttgttcaaataacattgctc 140  Q
    ||||||||| | |||||||||| ||| ||||||||||||| ||||||||    
T  14443334 gttgtccaaaaggttgtcacaaaaaatggttgttcaaatatcattgctc 14443382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 92 - 140
Target Start/End: Original strand, 50506524 - 50506572
Alignment:
Q  92 gttgtccaacaagttgtcacaataaagggttgttcaaataacattgctc 140  Q
    ||||||||| | |||||||||| |||  |||||||||||||||||||||    
T  50506524 gttgtccaaaaggttgtcacaagaaatagttgttcaaataacattgctc 50506572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 92 - 136
Target Start/End: Original strand, 54000834 - 54000878
Alignment:
Q  92 gttgtccaacaagttgtcacaataaagggttgttcaaataacatt 136  Q
    ||||||||| | ||||||||||||||  |||||||||||||||||    
T  54000834 gttgtccaaaaggttgtcacaataaatagttgttcaaataacatt 54000878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 92 - 140
Target Start/End: Original strand, 29525999 - 29526047
Alignment:
Q  92 gttgtccaacaagttgtcacaataaagggttgttcaaataacattgctc 140  Q
    |||||||||||||||||||||||||| |||||| |||||||||||||||    
T  29525999 gttgtccaacaagttgtcacaataaatggttgtacaaataacattgctc 29526047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 92 - 142
Target Start/End: Complemental strand, 34307476 - 34307426
Alignment:
Q  92 gttgtccaacaagttgtcacaataaagggttgttcaaataacattgctcat 142  Q
    ||||||||| |||||||||||| ||||| ||||||||||||||||||||||    
T  34307476 gttgtccaataagttgtcacaagaaaggattgttcaaataacattgctcat 34307426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 92 - 140
Target Start/End: Complemental strand, 4494172 - 4494124
Alignment:
Q  92 gttgtccaacaagttgtcacaataaagggttgttcaaataacattgctc 140  Q
    ||||||||||||||||||| || ||| ||||||||||||||||||||||    
T  4494172 gttgtccaacaagttgtcataagaaatggttgttcaaataacattgctc 4494124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 102 - 137
Target Start/End: Complemental strand, 27168607 - 27168572
Alignment:
Q  102 aagttgtcacaataaagggttgttcaaataacattg 137  Q
    ||||||||| ||||||||||||||||||||||||||    
T  27168607 aagttgtcataataaagggttgttcaaataacattg 27168572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 92 - 137
Target Start/End: Complemental strand, 39713972 - 39713927
Alignment:
Q  92 gttgtccaacaagttgtcacaataaagggttgttcaaataacattg 137  Q
    |||||||||||| || |||||| ||| |||||||||||||||||||    
T  39713972 gttgtccaacaaattatcacaaaaaatggttgttcaaataacattg 39713927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 92 - 140
Target Start/End: Original strand, 31104800 - 31104848
Alignment:
Q  92 gttgtccaacaagttgtcacaataaagggttgttcaaataacattgctc 140  Q
    |||||| ||||| ||||||||| |||  |||||||||||||||||||||    
T  31104800 gttgtcaaacaaattgtcacaagaaaaagttgttcaaataacattgctc 31104848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 96 - 140
Target Start/End: Complemental strand, 32145917 - 32145873
Alignment:
Q  96 tccaacaagttgtcacaataaagggttgttcaaataacattgctc 140  Q
    |||||||||||||| |  |||| ||||||||||||||||||||||    
T  32145917 tccaacaagttgtccccgtaaatggttgttcaaataacattgctc 32145873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 92 - 140
Target Start/End: Original strand, 53681187 - 53681235
Alignment:
Q  92 gttgtccaacaagttgtcacaataaagggttgttcaaataacattgctc 140  Q
    ||||||||| | |||||||||| ||| ||||||||| ||||||||||||    
T  53681187 gttgtccaaaaggttgtcacaaaaaatggttgttcatataacattgctc 53681235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 93 - 140
Target Start/End: Complemental strand, 33451499 - 33451452
Alignment:
Q  93 ttgtccaacaagttgtcacaataaagggttgttcaaataacattgctc 140  Q
    ||||| ||||||||||||||| ||||||||||||||||||||||||||    
T  33451499 ttgtctaacaagttgtcacaagaaagggttgttcaaataacattgctc 33451452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 92 - 140
Target Start/End: Original strand, 1068742 - 1068790
Alignment:
Q  92 gttgtccaacaagttgtcacaataaagggttgttcaaataacattgctc 140  Q
    |||||||||||||||||||||  ||| ||||||||||||||||||||||    
T  1068742 gttgtccaacaagttgtcacataaaaaggttgttcaaataacattgctc 1068790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 102 - 141
Target Start/End: Original strand, 42652739 - 42652778
Alignment:
Q  102 aagttgtcacaataaagggttgttcaaataacattgctca 141  Q
    ||||||||||||||||| ||||||||||||||||||||||    
T  42652739 aagttgtcacaataaagagttgttcaaataacattgctca 42652778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 92 - 140
Target Start/End: Complemental strand, 15716911 - 15716863
Alignment:
Q  92 gttgtccaacaagttgtcacaataaagggttgttcaaataacattgctc 140  Q
    |||||||||||||||||||||  |||  |||||||||||||||||||||    
T  15716911 gttgtccaacaagttgtcacataaaaaagttgttcaaataacattgctc 15716863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 92 - 140
Target Start/End: Complemental strand, 33107802 - 33107754
Alignment:
Q  92 gttgtccaacaagttgtcacaataaagggttgttcaaataacattgctc 140  Q
    |||||||||||| ||||||||  ||| ||||||||||||||||||||||    
T  33107802 gttgtccaacaaattgtcacataaaaaggttgttcaaataacattgctc 33107754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 92 - 140
Target Start/End: Complemental strand, 34435672 - 34435624
Alignment:
Q  92 gttgtccaacaagttgtcacaataaagggttgttcaaataacattgctc 140  Q
    ||||| |||||||||||||||  ||| ||||||||||||||||||||||    
T  34435672 gttgtgcaacaagttgtcacataaaaaggttgttcaaataacattgctc 34435624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 92 - 140
Target Start/End: Original strand, 44091022 - 44091070
Alignment:
Q  92 gttgtccaacaagttgtcacaataaagggttgttcaaataacattgctc 140  Q
    ||||||||| |||||||||||  ||| ||||||||||||||||||||||    
T  44091022 gttgtccaaaaagttgtcacatgaaaaggttgttcaaataacattgctc 44091070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 108 - 139
Target Start/End: Complemental strand, 36874032 - 36874001
Alignment:
Q  108 tcacaataaagggttgttcaaataacattgct 139  Q
    ||||||||||||||||||||||||||||||||    
T  36874032 tcacaataaagggttgttcaaataacattgct 36874001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 93 - 142
Target Start/End: Original strand, 11134720 - 11134769
Alignment:
Q  93 ttgtccaacaagttgtcacaataaagggttgttcaaataacattgctcat 142  Q
    |||||||||||||| |||||| |||   ||||||||||||||||||||||    
T  11134720 ttgtccaacaagttatcacaagaaatatttgttcaaataacattgctcat 11134769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 92 - 140
Target Start/End: Original strand, 26027032 - 26027080
Alignment:
Q  92 gttgtccaacaagttgtcacaataaagggttgttcaaataacattgctc 140  Q
    |||| ||||||||||||||||| |||  | |||||||||||||||||||    
T  26027032 gttggccaacaagttgtcacaagaaatagctgttcaaataacattgctc 26027080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 92 - 140
Target Start/End: Complemental strand, 28772061 - 28772013
Alignment:
Q  92 gttgtccaacaagttgtcacaataaagggttgttcaaataacattgctc 140  Q
    ||||||||| | |||||||||| ||| ||||||||||||| ||||||||    
T  28772061 gttgtccaaaaggttgtcacaagaaatggttgttcaaatatcattgctc 28772013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 102 - 140
Target Start/End: Complemental strand, 26481015 - 26480977
Alignment:
Q  102 aagttgtcacaataaagggttgttcaaataacattgctc 140  Q
    |||||||||||||||||||||||||||||||||||||||    
T  26481015 aagttgtcacaataaagggttgttcaaataacattgctc 26480977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 307 - 353
Target Start/End: Original strand, 41265762 - 41265808
Alignment:
Q  307 aatgtgaatgtaaatgtcttaatttatacacgaaacaagattaattt 353  Q
    |||||||||||| ||||||||||||||||||| ||||||||||||||    
T  41265762 aatgtgaatgtatatgtcttaatttatacacggaacaagattaattt 41265808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 92 - 142
Target Start/End: Original strand, 44239172 - 44239222
Alignment:
Q  92 gttgtccaacaagttgtcacaataaagggttgttcaaataacattgctcat 142  Q
    ||||||||| || ||||||||||||| ||||||||||||||||||||||||    
T  44239172 gttgtccaaaaaattgtcacaataaatggttgttcaaataacattgctcat 44239222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 92 - 141
Target Start/End: Complemental strand, 2427934 - 2427885
Alignment:
Q  92 gttgtccaacaagttgtcacaataaagggttgttcaaataacattgctca 141  Q
    |||||||||||| ||||||||| ||| |||||||||||||||||||||||    
T  2427934 gttgtccaacaaattgtcacaaaaaatggttgttcaaataacattgctca 2427885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 92 - 145
Target Start/End: Original strand, 11965929 - 11965982
Alignment:
Q  92 gttgtccaacaagttgtcacaataaagggttgttcaaataacattgctcattgg 145  Q
    |||||||||||||||||||||  ||| |||||||||||||||||||||| ||||    
T  11965929 gttgtccaacaagttgtcacataaaaaggttgttcaaataacattgctctttgg 11965982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 92 - 141
Target Start/End: Complemental strand, 37731135 - 37731086
Alignment:
Q  92 gttgtccaacaagttgtcacaataaagggttgttcaaataacattgctca 141  Q
    ||||| |||||||||||||||  ||| |||||||||||||||||||||||    
T  37731135 gttgtgcaacaagttgtcacataaaaaggttgttcaaataacattgctca 37731086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 92 - 136
Target Start/End: Original strand, 14877125 - 14877169
Alignment:
Q  92 gttgtccaacaagttgtcacaataaagggttgttcaaataacatt 136  Q
    |||||| ||||||||||||||| ||| ||||||||||||||||||    
T  14877125 gttgtctaacaagttgtcacaagaaatggttgttcaaataacatt 14877169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 92 - 140
Target Start/End: Original strand, 31578570 - 31578618
Alignment:
Q  92 gttgtccaacaagttgtcacaataaagggttgttcaaataacattgctc 140  Q
    |||||||||||||||||||||| ||| | ||||||||||| ||||||||    
T  31578570 gttgtccaacaagttgtcacaagaaatgattgttcaaatatcattgctc 31578618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 92 - 140
Target Start/End: Complemental strand, 37316750 - 37316702
Alignment:
Q  92 gttgtccaacaagttgtcacaataaagggttgttcaaataacattgctc 140  Q
    ||||||||||||||||||| |  ||| ||||||||||||||||||||||    
T  37316750 gttgtccaacaagttgtcatagaaaaaggttgttcaaataacattgctc 37316702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 92 - 140
Target Start/End: Complemental strand, 36587406 - 36587358
Alignment:
Q  92 gttgtccaacaagttgtcacaataaagggttgttcaaataacattgctc 140  Q
    ||||||||| | ||||||| || ||| ||||||||||||||||||||||    
T  36587406 gttgtccaaaaggttgtcagaagaaatggttgttcaaataacattgctc 36587358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 102 - 140
Target Start/End: Original strand, 4213218 - 4213256
Alignment:
Q  102 aagttgtcacaataaagggttgttcaaataacattgctc 140  Q
    |||||||||||||||||||||||||||||||||||||||    
T  4213218 aagttgtcacaataaagggttgttcaaataacattgctc 4213256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 92 - 136
Target Start/End: Complemental strand, 7918997 - 7918953
Alignment:
Q  92 gttgtccaacaagttgtcacaataaagggttgttcaaataacatt 136  Q
    |||||| ||||||||||||||| ||||||||||||||||||||||    
T  7918997 gttgtctaacaagttgtcacaagaaagggttgttcaaataacatt 7918953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 92 - 140
Target Start/End: Complemental strand, 47642542 - 47642494
Alignment:
Q  92 gttgtccaacaagttgtcacaataaagggttgttcaaataacattgctc 140  Q
    |||||||||||||||||| ||| ||| ||||||||||||||||||||||    
T  47642542 gttgtccaacaagttgtcccaaaaaatggttgttcaaataacattgctc 47642494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 92 - 140
Target Start/End: Complemental strand, 48983603 - 48983555
Alignment:
Q  92 gttgtccaacaagttgtcacaataaagggttgttcaaataacattgctc 140  Q
    |||||||||||||||||||||||||| |||||| | |||||||||||||    
T  48983603 gttgtccaacaagttgtcacaataaatggttgtaccaataacattgctc 48983555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 92 - 143
Target Start/End: Complemental strand, 38878836 - 38878785
Alignment:
Q  92 gttgtccaacaagttgtcacaataaagggttgttcaaataacattgctcatt 143  Q
    |||||||||||||||||||||  |||  ||||||||||||||||||||||||    
T  38878836 gttgtccaacaagttgtcacataaaaatgttgttcaaataacattgctcatt 38878785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 92 - 140
Target Start/End: Original strand, 27742745 - 27742793
Alignment:
Q  92 gttgtccaacaagttgtcacaataaagggttgttcaaataacattgctc 140  Q
    ||||||||||||||||| |||  ||| ||||||||||||||||||||||    
T  27742745 gttgtccaacaagttgttacataaaaaggttgttcaaataacattgctc 27742793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 92 - 140
Target Start/End: Complemental strand, 40439775 - 40439727
Alignment:
Q  92 gttgtccaacaagttgtcacaataaagggttgttcaaataacattgctc 140  Q
    |||||||||||| ||||||||  ||| ||||||||||||||||||||||    
T  40439775 gttgtccaacaaattgtcacataaaaaggttgttcaaataacattgctc 40439727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 92 - 140
Target Start/End: Original strand, 42468728 - 42468776
Alignment:
Q  92 gttgtccaacaagttgtcacaataaagggttgttcaaataacattgctc 140  Q
    |||||||||||| ||||||||| ||| ||||||||||||| ||||||||    
T  42468728 gttgtccaacaaattgtcacaagaaatggttgttcaaatatcattgctc 42468776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 92 - 141
Target Start/End: Original strand, 48858959 - 48859008
Alignment:
Q  92 gttgtccaacaagttgtcacaataaagggttgttcaaataacattgctca 141  Q
    ||||||||| | |||||||||| ||| ||||||||| |||||||||||||    
T  48858959 gttgtccaaaaggttgtcacaagaaatggttgttcatataacattgctca 48859008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.000000000009; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 102 - 142
Target Start/End: Original strand, 17182244 - 17182284
Alignment:
Q  102 aagttgtcacaataaagggttgttcaaataacattgctcat 142  Q
    ||||||||| |||||||||||||||||||||||||||||||    
T  17182244 aagttgtcataataaagggttgttcaaataacattgctcat 17182284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 302 - 353
Target Start/End: Original strand, 34260975 - 34261026
Alignment:
Q  302 tatggaatgtgaatgtaaatgtcttaatttatacacgaaacaagattaattt 353  Q
    |||| |||||||||||| |||||||||||||||||||  |||||||||||||    
T  34260975 tatgaaatgtgaatgtatatgtcttaatttatacacgggacaagattaattt 34261026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 102 - 140
Target Start/End: Original strand, 1287059 - 1287097
Alignment:
Q  102 aagttgtcacaataaagggttgttcaaataacattgctc 140  Q
    |||||||||||||||||| ||||||||||||||||||||    
T  1287059 aagttgtcacaataaaggattgttcaaataacattgctc 1287097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 92 - 140
Target Start/End: Original strand, 33712456 - 33712504
Alignment:
Q  92 gttgtccaacaagttgtcacaataaagggttgttcaaataacattgctc 140  Q
    ||||||||||||||||| |||  ||| ||||||||||||||||||||||    
T  33712456 gttgtccaacaagttgttacataaaaaggttgttcaaataacattgctc 33712504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 93 - 140
Target Start/End: Complemental strand, 5739698 - 5739651
Alignment:
Q  93 ttgtccaacaagttgtcacaataaagggttgttcaaataacattgctc 140  Q
    |||||||||||||||||| || ||| || |||||||||||||||||||    
T  5739698 ttgtccaacaagttgtcataagaaatggatgttcaaataacattgctc 5739651  T

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Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 92 - 142
Target Start/End: Original strand, 8645444 - 8645494
Alignment:
Q  92 gttgtccaacaagttgtcacaataaagggttgttcaaataacattgctcat 142  Q
    ||||||||| | |||||||||| ||| ||||||||||||| ||||||||||    
T  8645444 gttgtccaaaaggttgtcacaagaaatggttgttcaaatatcattgctcat 8645494  T

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Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 92 - 137
Target Start/End: Complemental strand, 18065025 - 18064980
Alignment:
Q  92 gttgtccaacaagttgtcacaataaagggttgttcaaataacattg 137  Q
    |||||||||||||||||||||  |||  ||||||||||||||||||    
T  18065025 gttgtccaacaagttgtcacataaaaaagttgttcaaataacattg 18064980  T

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Target: scaffold0201 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0201
Description:

Target: scaffold0201; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 92 - 141
Target Start/End: Original strand, 8608 - 8657
Alignment:
Q  92 gttgtccaacaagttgtcacaataaagggttgttcaaataacattgctca 141  Q
    |||||| ||||||||||||||| |||  ||||||||||||||||||||||    
T  8608 gttgtctaacaagttgtcacaagaaatagttgttcaaataacattgctca 8657  T

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Target: scaffold0618 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0618
Description:

Target: scaffold0618; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 92 - 140
Target Start/End: Complemental strand, 8888 - 8840
Alignment:
Q  92 gttgtccaacaagttgtcacaataaagggttgttcaaataacattgctc 140  Q
    ||||||||| |||||||||||  ||| ||||||||||||||||||||||    
T  8888 gttgtccaaaaagttgtcacatgaaaaggttgttcaaataacattgctc 8840  T

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Target: scaffold0184 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0184
Description:

Target: scaffold0184; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 92 - 140
Target Start/End: Complemental strand, 13492 - 13444
Alignment:
Q  92 gttgtccaacaagttgtcacaataaagggttgttcaaataacattgctc 140  Q
    ||||||||| |||||||||||| |||| |||||| ||||||||||||||    
T  13492 gttgtccaataagttgtcacaaaaaagagttgtttaaataacattgctc 13444  T

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Target: scaffold0078 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0078
Description:

Target: scaffold0078; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 92 - 140
Target Start/End: Original strand, 59352 - 59400
Alignment:
Q  92 gttgtccaacaagttgtcacaataaagggttgttcaaataacattgctc 140  Q
    ||||||||| |||||||||||| |||| |||||| ||||||||||||||    
T  59352 gttgtccaataagttgtcacaaaaaagagttgtttaaataacattgctc 59400  T

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Target: scaffold0034 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 98 - 138
Target Start/End: Complemental strand, 101830 - 101790
Alignment:
Q  98 caacaagttgtcacaataaagggttgttcaaataacattgc 138  Q
    |||||||||||||||| |||||||||| |||||||||||||    
T  101830 caacaagttgtcacaagaaagggttgtgcaaataacattgc 101790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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