View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19803_low_1 (Length: 747)
Name: NF19803_low_1
Description: NF19803
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19803_low_1 |
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| [»] chr4 (1 HSPs) |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 517; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 517; E-Value: 0
Query Start/End: Original strand, 10 - 747
Target Start/End: Complemental strand, 29981038 - 29980288
Alignment:
| Q |
10 |
tccaagaatatgatcctaaaactgatattcatccattagtcatggaggtttctgattactctaatatgcctgacacaccagtccatggtgtatcagtaca |
109 |
Q |
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| T |
29981038 |
tccaacaatatgatcctaaaacagatattcatccattagtcatggaggtttctgattactctaatatgcctgacacaccagtccatggtgtatcagtaca |
29980939 |
T |
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| Q |
110 |
tggtgtatagaatagatata------------gatgatatgcattatatgattaagctaatgttgttgtttgcatgactttgtacattggatttagatac |
197 |
Q |
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| T |
29980938 |
tggtgtatagaatagatataaatatagatatagatgatatgcattatatgattaagctaatgttgttgtttgcatgactttgtacattggatttagatac |
29980839 |
T |
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| Q |
198 |
caaatacaaaaaggaagaccatgtcagaagttttttgtgtcggaattagtgaattcaagtg--agtgattaatctcacatcgaattataaataagagtta |
295 |
Q |
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| T |
29980838 |
caaatacaaaaaggaagaccatgtcagaagttttttgtgtcggagttagtgaattcaagtgtgagtgattaatctcacatcgaattataaataagagtta |
29980739 |
T |
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| Q |
296 |
tgttccatctcattaagatgtcacttttgctttcaatagtttggctaattacaaatgttgaggtgttgcttgcttagctcagttggtaggcagggacgga |
395 |
Q |
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| T |
29980738 |
tgttctatctcattaagatgtcacttttgctttcaatagtttggctaattacaaatgttgaggtgttgcttgcttaactcagttggtaggcagggacgga |
29980639 |
T |
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| Q |
396 |
gctagaaaaaatcattaagggtggcgannnnnnnnnnnnnacaagttgattatatacaatttagtttatttagtgaattggccgaatggtttatatttaa |
495 |
Q |
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| T |
29980638 |
gctagaaaaaatcattaagggtggcgatttttttctttttacaagttgattatatacagtttagtttatttagtgaattggctgaatggtttatatttaa |
29980539 |
T |
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| Q |
496 |
aatttaaaataatgtgaatacaattgaacataaataatcaatgagttctgccaaaatgtaaaccgttcgagagaactcaaacttgattcctatatcgaac |
595 |
Q |
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| T |
29980538 |
aatttaaaataatgtgaatacggttgaacataaatgattaatgagttctaccaaaatgtaaaccgttcgagagaattcaagcttgattcctatatcgaac |
29980439 |
T |
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| Q |
596 |
cgtggtcacattcaaacttcatattactaagggtcactttcattagaaaccaaaggattaaataatgaatatagtgtcgttttggtccctgtctttactc |
695 |
Q |
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| T |
29980438 |
tgtggtcacattcaaacttcatattaccaaggatcactttcattagaaaccgaaggattaaaaaatgagtaaatagtcactttgat-cctgactttacac |
29980340 |
T |
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| Q |
696 |
cacgctgtcactttactctctaactcattataaactacaaaatagtccctga |
747 |
Q |
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| T |
29980339 |
ctcgctgtcactttagtccccaactcaagataaactacaaaatagtccctga |
29980288 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 680 - 747
Target Start/End: Original strand, 59568 - 59635
Alignment:
| Q |
680 |
gtccctgtctttactccacgctgtcactttactctctaactcattataaactacaaaatagtccctga |
747 |
Q |
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| T |
59568 |
gtccctgactttacacctcgctgtcactttagtccctgactcaggataaactacaaaatagtccctga |
59635 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 385 - 422
Target Start/End: Original strand, 15046536 - 15046573
Alignment:
| Q |
385 |
gcagggacggagctagaaaaaatcattaagggtggcga |
422 |
Q |
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| T |
15046536 |
gcagggacggagccagaaaaaaccattaagggtggcga |
15046573 |
T |
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