View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19803_low_11 (Length: 393)
Name: NF19803_low_11
Description: NF19803
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19803_low_11 |
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Alignment Details
Target: chr6 (Bit Score: 167; Significance: 2e-89; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 181 - 376
Target Start/End: Original strand, 34864082 - 34864279
Alignment:
| Q |
181 |
aagaaaaaagaagatccactgcaccattgaacatggttaattgcacttcaagcgtaactaattgagtcacttttttggttattctattgctatatgatta |
280 |
Q |
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| T |
34864082 |
aagaaaaaagaagatccactgcaccattgaacatggttaattgcactttaagcgtaactaattgagtcacttttttggttatgctattgctatatgatta |
34864181 |
T |
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| Q |
281 |
tgctaaaacaaacaaataatagactcat--aatcaaaaacatcatattccactaatcagtcaatgtgcacaacagaagtaccggaaatcaccaagcca |
376 |
Q |
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| T |
34864182 |
tgctaaaacaaacaaataatagagtcataaaatcaaaaacatcatattccactaatcagtcaatgtgcacaacagaagtactggaaattaccaagcca |
34864279 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 4 - 188
Target Start/End: Original strand, 34860914 - 34861082
Alignment:
| Q |
4 |
aattcctacttctttcctatggtttgatgatactagtacataatcataatctggtacaaatcatcctatccatcaatatcaagagcagtgtcacttagtc |
103 |
Q |
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| T |
34860914 |
aattcctacttctttcctatgctttgatgatactagtacataatcataatctggtacaaatcatcctatccatcaatatcaagagcagt----------- |
34861002 |
T |
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| Q |
104 |
tacccccattttcagataacaaatcatcccccatccatcaacttcaagatcaatgccacacttacttgatcatcataaagaaaaa |
188 |
Q |
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| T |
34861003 |
-----ccattttcagataacaaatcatcccccatccatcaacttcaagatcaatgccacacttacttgatcatcataaagaaaaa |
34861082 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 322 - 350
Target Start/End: Original strand, 7945218 - 7945246
Alignment:
| Q |
322 |
atattccactaatcagtcaatgtgcacaa |
350 |
Q |
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| T |
7945218 |
atattccactaatcagtcaatgtgcacaa |
7945246 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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