View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19803_low_12 (Length: 381)

Name: NF19803_low_12
Description: NF19803
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19803_low_12
NF19803_low_12
[»] chr4 (5 HSPs)
chr4 (17-369)||(29980026-29980386)
chr4 (183-352)||(29978835-29979007)
chr4 (183-334)||(39268803-39268954)
chr4 (237-334)||(39267740-39267837)
chr4 (59-131)||(39268231-39268303)
[»] chr8 (6 HSPs)
chr8 (17-352)||(43539106-43539444)
chr8 (183-341)||(43539752-43539911)
chr8 (183-352)||(59553-59723)
chr8 (183-350)||(35675617-35675785)
chr8 (185-332)||(60168-60312)
chr8 (17-55)||(35675882-35675920)
[»] chr3 (3 HSPs)
chr3 (221-361)||(26652595-26652735)
chr3 (183-351)||(27823731-27823900)
chr3 (61-104)||(26652465-26652508)
[»] chr7 (5 HSPs)
chr7 (183-352)||(8484158-8484328)
chr7 (183-357)||(8077545-8077723)
chr7 (237-340)||(8075498-8075601)
chr7 (281-351)||(7258277-7258347)
chr7 (270-352)||(48646050-48646132)
[»] chr1 (1 HSPs)
chr1 (271-341)||(17589681-17589751)


Alignment Details
Target: chr4 (Bit Score: 199; Significance: 1e-108; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 17 - 369
Target Start/End: Original strand, 29980026 - 29980386
Alignment:
Q  17 caggttaggccttttcttttggactctgcagtggttttgct-------ttgtgatgattaacttatctagtttttcatctttaaacccaaaagaataaca 109  Q
    |||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29980026 caggttaggccttttcttttggactctgcagtggttttgctgctgtatttgtgatgattaacttatctagtttttcatctttaaacccaaaagaataaca 29980125  T
Q  110 tctttatgaagatagagatgaatattcttttttctggnnnnnnnnnnn-atcatgaataagaaatannnnnnnnactttcaatttggttcctataattga 208  Q
    ||||||||||||||||||||||||||||||||| |              |||||||||||||||||        |||||||  |||||||||||||||||    
T  29980126 tctttatgaagatagagatgaatattctttttttttttggtttttttttatcatgaataagaaatattttttttactttcagattggttcctataattga 29980225  T
Q  209 cacatcagtaggtaacagaattttttaa-ggtaaggactaaactgataacaaatatatatattcagggactattttgtagtttatcctgagttggggact 307  Q
    ||||| |||||||||||||||||||||| ||||| |||||||||||||||||||||| | |||||||||||||||||||||||||| |||||||||||||    
T  29980226 cacataagtaggtaacagaattttttaacggtaaagactaaactgataacaaatatacacattcagggactattttgtagtttatcttgagttggggact 29980325  T
Q  308 aaagtgacagcgaggtgtaaagtcagggaccaaaacgactatttattcattttttaatcctt 369  Q
    ||||||||||||||||||||||||| ||| ||||  ||||||||| ||||||||||||||||    
T  29980326 aaagtgacagcgaggtgtaaagtca-ggatcaaagtgactatttactcattttttaatcctt 29980386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 183 - 352
Target Start/End: Complemental strand, 29979007 - 29978835
Alignment:
Q  183 actttcaatttggttcctataattgacacatcagtaggtaacagaattttttaa-ggtaaggactaaactgataacaaatatatatattcagggactatt 281  Q
    |||||||||||||| ||| ||||| |||||||   || ||||| || ||||||| |||||||| |||||||||||||||| ||||| ||||| |||||||    
T  29979007 actttcaatttggtccctctaattaacacatcgtgagttaacaaaaatttttaacggtaaggattaaactgataacaaatgtatattttcagagactatt 29978908  T
Q  282 tt-gtagtttatcctgagttgggg-actaaagtgacagcgaggtgtaaagtcagggaccaaaacgactattta 352  Q
    || ||| || ||| | ||| |||| |||||||||||| ||| ||||||||||||| ||||||| |||||||||    
T  29978907 ttggtatttaatcataagtcggggaactaaagtgacaacgaagtgtaaagtcaggaaccaaaatgactattta 29978835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 183 - 334
Target Start/End: Original strand, 39268803 - 39268954
Alignment:
Q  183 actttcaatttggttcctataattgacacatcagtaggtaacagaattttttaaggtaaggactaaactgataacaaatatatatattcagggactattt 282  Q
    |||||||||||||| | ||  ||||||||||||  | |||||||| ||||| | |||||  ||||||||||||||| | ||| |  |||||| ||| | |    
T  39268803 actttcaatttggtccttaggattgacacatcaccatgtaacagagtttttaacggtaaaaactaaactgataacagagatacacgttcaggaactttat 39268902  T
Q  283 tgtagtttatcctgagttggggactaaagtgacagcgaggtgtaaagtcagg 334  Q
    |||| ||||| | |||| || |||||||||||||||||| |||||| |||||    
T  39268903 tgtattttattcagagtcggagactaaagtgacagcgagatgtaaaatcagg 39268954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 237 - 334
Target Start/End: Complemental strand, 39267837 - 39267740
Alignment:
Q  237 ggtaaggactaaactgataacaaatatatatattcagggactattttgtagtttatcctgagttggggactaaagtgacagcgaggtgtaaagtcagg 334  Q
    |||||||||||||||||||||| || || | ||||||| ||| | ||||| |||||||| | | || |||| |||||||||||||||| |||||||||    
T  39267837 ggtaaggactaaactgataacagatgtacacattcaggcactttattgtattttatcctcaatcggcgactgaagtgacagcgaggtgcaaagtcagg 39267740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 59 - 131
Target Start/End: Original strand, 39268231 - 39268303
Alignment:
Q  59 tgtgatgattaacttatctagtttttcatctttaaacccaaaagaataacatctttatgaagatagagatgaa 131  Q
    |||||||||||||||| |  |  ||||||||||||||||||||||| |||||||| |||||||| ||||||||    
T  39268231 tgtgatgattaacttaacaggcgtttcatctttaaacccaaaagaacaacatcttcatgaagatggagatgaa 39268303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 184; Significance: 2e-99; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 17 - 352
Target Start/End: Complemental strand, 43539444 - 43539106
Alignment:
Q  17 caggttaggccttttcttttggactctgcagtggttttgct-------ttgtgatgattaacttatctagtttttcatctttaaacccaaaagaataaca 109  Q
    |||||||||||||||||||||||||||| ||||||||| ||       ||| |||||||||||||||||||||||||||||||||||||||||||||| |    
T  43539444 caggttaggccttttcttttggactctgtagtggtttttctgttgtgtttgcgatgattaacttatctagtttttcatctttaaacccaaaagaataaaa 43539345  T
Q  110 tctttatgaagatagagatgaatattcttttttctggnnnnnnnnnnnatcatgaataagaaatannnnnnnnactttcaatttggttcctataattgac 209  Q
    |||||||||||||||||||||||||||||||||||||           |||||||||||||||||        |||||||||||||| ||||||||||||    
T  43539344 tctttatgaagatagagatgaatattcttttttctggtttttt-----atcatgaataagaaatattttttttactttcaatttggtccctataattgac 43539250  T
Q  210 acatcagtaggtaacagaattttttaa-ggtaaggactaaactgataacaaatatatatattcagggactattttgtagtttatcctgagttggggacta 308  Q
    ||||| |||| |||||||||||||||| |||||||| ||||||||||||| ||||| | |||||||||||||||||||||||||||||||| ||||||||    
T  43539249 acatcggtagttaacagaattttttaacggtaaggattaaactgataacagatatacacattcagggactattttgtagtttatcctgagtcggggacta 43539150  T
Q  309 aagtgacagcgaggtgtaaagtcagggaccaaaacgactattta 352  Q
    |||||||||||||||| ||||| ||||||||||  |||||||||    
T  43539149 aagtgacagcgaggtgcaaagttagggaccaaagtgactattta 43539106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 183 - 341
Target Start/End: Original strand, 43539752 - 43539911
Alignment:
Q  183 actttcaatttggttcctataattgacacatcagtaggtaacagaattttttaa-ggtaaggactaaactgataacaaatatatatattcagggactatt 281  Q
    |||||||||||||| ||||| ||||||||||||  || ||||| |  ||||||| |||||||||||||||||||||| || |  ||||||| ||||||||    
T  43539752 actttcaatttggtccctatgattgacacatcatgagttaacataggtttttaacggtaaggactaaactgataacagatgtgcatattcaaggactatt 43539851  T
Q  282 ttgtagtttatcctgagttggggactaaagtgacagcgaggtgtaaagtcagggaccaaa 341  Q
    |||||||||||||||||| |||||||||| ||||||||||||| ||||||||||||||||    
T  43539852 ttgtagtttatcctgagtaggggactaaaatgacagcgaggtgcaaagtcagggaccaaa 43539911  T

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Target: chr8; HSP #3
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 183 - 352
Target Start/End: Complemental strand, 59723 - 59553
Alignment:
Q  183 actttcaatttggttcctataattgacacatcagtaggtaacagaattttttaag-gtaaggactaaactgataacaaatatatatattcagggactatt 281  Q
    |||||||||||||| ||||| ||||||||||||   | ||||| ||||||||||  ||||||||||||||||| ||| || ||   ||||||||||||||    
T  59723 actttcaatttggtccctatgattgacacatcatcggttaacataattttttaattgtaaggactaaactgatgacagatctacccattcagggactatt 59624  T
Q  282 ttgtagtttatcctgagttggggactaaagtgacagcgaggtgtaaagtcagggaccaaaacgactattta 352  Q
    ||||||||||||||||||  |||||||||||||||||||||||||||||||||||| |||  |||||||||    
T  59623 ttgtagtttatcctgagtcagggactaaagtgacagcgaggtgtaaagtcagggactaaagtgactattta 59553  T

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Target: chr8; HSP #4
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 183 - 350
Target Start/End: Complemental strand, 35675785 - 35675617
Alignment:
Q  183 actttcaatttggttcctataattgacacatcagtaggtaacagaattttttaa-ggtaaggactaaactgataacaaatatatatattcagggactatt 281  Q
    ||||| ||||||||  |||||||||||||||||  |  |||||||| ||||||| |||||||| | ||||||||||| || || |||||||  || ||||    
T  35675785 acttttaatttggtctctataattgacacatcatcaattaacagaaatttttaacggtaaggattgaactgataacagatgtacatattcaaagaatatt 35675686  T
Q  282 ttgtagtttatcctgagttggggactaaagtgacagcgaggtgtaaagtcagggaccaaaacgactatt 350  Q
    |||||||||||||| ||||| |||||||||||| ||||||||| |||||||  |||||||| |||||||    
T  35675685 ttgtagtttatcctaagttgaggactaaagtgatagcgaggtgcaaagtcaacgaccaaaatgactatt 35675617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 185 - 332
Target Start/End: Original strand, 60168 - 60312
Alignment:
Q  185 tttcaatttggttcctataattgacacatcagtaggtaacagaattttttaa-ggtaaggactaaactgataacaaatatatatattcagggactatttt 283  Q
    |||||||||||| ||||| | ||||||||||| || |||||||| ||||||| ||||| ||||| ||||||||||  | || | |||||||||||||| |    
T  60168 tttcaatttggtccctatgaatgacacatcagcagttaacagaaatttttaaaggtaaagactagactgataacaggtctacacattcagggactattct 60267  T
Q  284 gtagtttatcctgagttggggactaaagtgacagcgaggtgtaaagtca 332  Q
    ||||||||||||||    ||||| ||||||||| ||||||| |||||||    
T  60268 gtagtttatcctga----gggaccaaagtgacaacgaggtgcaaagtca 60312  T

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Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 17 - 55
Target Start/End: Complemental strand, 35675920 - 35675882
Alignment:
Q  17 caggttaggccttttcttttggactctgcagtggttttg 55  Q
    ||||||||||||||||||||| ||||||| |||||||||    
T  35675920 caggttaggccttttcttttgaactctgcggtggttttg 35675882  T

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Target: chr3 (Bit Score: 65; Significance: 2e-28; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 221 - 361
Target Start/End: Original strand, 26652595 - 26652735
Alignment:
Q  221 taacagaattttttaaggtaaggactaaactgataacaaatatatatattcagggactattttgtagtttatcctgagttggggactaaagtgacagcga 320  Q
    ||||||||||||| |  ||||||||||||||||||||| | ||| | ||||| ||||||||||||| |||||||| |||  |||||||||||||||||||    
T  26652595 taacagaatttttaacagtaaggactaaactgataacagagatacacattcatggactattttgtattttatcctaagtcagggactaaagtgacagcga 26652694  T
Q  321 ggtgtaaagtcagggaccaaaacgactatttattcattttt 361  Q
    | || ||||||||||||| ||  ||||||||| ||| ||||    
T  26652695 gatgcaaagtcagggacccaagtgactatttactcaatttt 26652735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 183 - 351
Target Start/End: Complemental strand, 27823900 - 27823731
Alignment:
Q  183 actttcaatttggttcctataattgacacatcagtaggtaacagaattttttaa-ggtaaggactaaactgataacaaatatatatattcagggactatt 281  Q
    |||||||||||| | | ||||||||||||||||  |  |||||||| ||||||| |||||| ||||||| ||||||| | ||| | |||||  |||| |     
T  27823900 actttcaatttgatccttataattgacacatcaccatttaacagaagtttttaacggtaagaactaaaccgataacagagatagacattcaaagacttta 27823801  T
Q  282 ttgtagtttatcctgagttggggactaaagtgacagcgaggtgtaaagtcagggaccaaaacgactattt 351  Q
    ||||| |||||||||  | || || |||| ||||||  ||||||||| ||| |||  |||| ||||||||    
T  27823800 ttgtattttatcctggatcggagattaaaatgacagttaggtgtaaaatcaaggattaaaatgactattt 27823731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 61 - 104
Target Start/End: Original strand, 26652465 - 26652508
Alignment:
Q  61 tgatgattaacttatctagtttttcatctttaaacccaaaagaa 104  Q
    ||||||||||||||  | ||||||||||||||||||||||||||    
T  26652465 tgatgattaacttacatggtttttcatctttaaacccaaaagaa 26652508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 59; Significance: 7e-25; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 183 - 352
Target Start/End: Original strand, 8484158 - 8484328
Alignment:
Q  183 actttcaatttggttcctataattgacacatcagtaggtaacagaattttttaa-ggtaaggactaaactgataacaaatatatatattcagggactatt 281  Q
    ||||||||||| || ||||| ||||||||||| |  | ||||||||  |||||| |||||| |||||||||||||||||| || | ||||| ||||||||    
T  8484158 actttcaatttagtccctatgattgacacatctgcggttaacagaaaattttaacggtaagtactaaactgataacaaatttacacattcatggactatt 8484257  T
Q  282 ttgtagtttatcctgagttggggactaaagtgacagcgaggtgtaaagtcagggaccaaaacgactattta 352  Q
    || ||||||||| | ||| ||| |||| ||||||| ||||||| ||| |||| |||||||  |||||||||    
T  8484258 ttatagtttatcttaagtcgggaactagagtgacaacgaggtgcaaaatcagagaccaaagtgactattta 8484328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 183 - 357
Target Start/End: Original strand, 8077545 - 8077723
Alignment:
Q  183 actttcaatttggttcctataattgacacatcagtaggtaacagaattttttaagg----taaggactaaactgataacaaatatatatattcagggact 278  Q
    ||||| ||||||||  |||| |||||||||||||| | ||||| ||||||| || |    |||||||||||| ||||||| || || | ||||||  | |    
T  8077545 acttttaatttggtctctatgattgacacatcagtcgttaacataatttttcaacggttataaggactaaacagataacagatctacacattcagaaatt 8077644  T
Q  279 attttgtagtttatcctgagttggggactaaagtgacagcgaggtgtaaagtcagggaccaaaacgactatttattcat 357  Q
    ||||| || |||||||||||| || ||||||||||||| |||||||||||||  |||||||||| ||||||||| ||||    
T  8077645 attttataatttatcctgagtcggagactaaagtgacaacgaggtgtaaagttggggaccaaaatgactatttactcat 8077723  T

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Target: chr7; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 237 - 340
Target Start/End: Complemental strand, 8075601 - 8075498
Alignment:
Q  237 ggtaaggactaaactgataacaaatatatatattcagggactattttgtagtttatcctgagttggggactaaagtgacagcgaggtgtaaagtcaggga 336  Q
    |||||||||||||||||||||| || || | ||||| ||| |||||||||||||||| | ||| || ||||||||| ||| |  |||||||||||| |||    
T  8075601 ggtaaggactaaactgataacagatctacacattcaaggattattttgtagtttatcataagtcggagactaaagtaacaacatggtgtaaagtcaagga 8075502  T
Q  337 ccaa 340  Q
    ||||    
T  8075501 ccaa 8075498  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 281 - 351
Target Start/End: Complemental strand, 7258347 - 7258277
Alignment:
Q  281 tttgtagtttatcctgagttggggactaaagtgacagcgaggtgtaaagtcagggaccaaaacgactattt 351  Q
    |||||| || |||||||||| |||||  | |||||| ||||||||| ||||||||||||||  ||||||||    
T  7258347 tttgtatttaatcctgagttagggacctatgtgacaacgaggtgtagagtcagggaccaaagtgactattt 7258277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 270 - 352
Target Start/End: Complemental strand, 48646132 - 48646050
Alignment:
Q  270 tcagggactattttgtagtttatcctgagttggggactaaagtgacagcgaggtgtaaagtcagggaccaaaacgactattta 352  Q
    |||||||||  |||||| || |||||||||  |||||  | |||||||||||||| | ||||||||||||||  |||||||||    
T  48646132 tcagggacttatttgtatttaatcctgagtcagggacctatgtgacagcgaggtgcatagtcagggaccaaagtgactattta 48646050  T

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Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 271 - 341
Target Start/End: Original strand, 17589681 - 17589751
Alignment:
Q  271 cagggactattttgtagtttatcctgagttggggactaaagtgacagcgaggtgtaaagtcagggaccaaa 341  Q
    |||||||||||||||| ||||||| ||||| | ||| |  ||| |||||||||| ||||||||||||||||    
T  17589681 cagggactattttgtattttatccggagttagagaccattgtgtcagcgaggtgcaaagtcagggaccaaa 17589751  T

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