View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19803_low_16 (Length: 336)
Name: NF19803_low_16
Description: NF19803
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19803_low_16 |
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Alignment Details
Target: chr1 (Bit Score: 140; Significance: 3e-73; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 13 - 189
Target Start/End: Original strand, 31458322 - 31458498
Alignment:
| Q |
13 |
aatattttcatggtcataaattcataaataagtacagttcnnnnnnnnnnnaaggaataaataagtacagttctatctacctttgcatacaccaatttaa |
112 |
Q |
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| T |
31458322 |
aatattttcatggtcataaattcataaataagtacagttcttttttttttgaaggaataaataagtacagttctatctacctttgcacacaccaatttaa |
31458421 |
T |
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| Q |
113 |
tttactatttactagtaaacaatctagtttttgaaagatacatacgataccatacattaaaatatacatcatcgtag |
189 |
Q |
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| T |
31458422 |
tttactatttactagtaaacaatctagtttttgaaagatacatacgataccatacattaaaatatacatcatcgtag |
31458498 |
T |
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Target: chr1; HSP #2
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 221 - 317
Target Start/End: Original strand, 31458530 - 31458626
Alignment:
| Q |
221 |
aaattgatgattatttacggtacttgtgtgattaagttaatgttaaaaatcattagagaggtccaattgaaaggaggaacatttgtttggttaccgt |
317 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
31458530 |
aaattgatgattatttacagtacttgtgtgattaagttaatgttaaaaatcattagagaggtccaattgaaaggaggaacacttgtttggttaccgt |
31458626 |
T |
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