View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19803_low_17 (Length: 326)
Name: NF19803_low_17
Description: NF19803
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19803_low_17 |
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Alignment Details
Target: chr2 (Bit Score: 95; Significance: 2e-46; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 132 - 254
Target Start/End: Original strand, 20117403 - 20117525
Alignment:
| Q |
132 |
agagttgaaaatcaaaatggtaaatgaagaaaattctaatattttcagtatttttattcgtagaaaacttaagatctttgttttgtataaaactacattg |
231 |
Q |
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|||||||| | |||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
20117403 |
agagttgagattcaaaatggtaaatgaagaaaattctcatattttcagtatttttatttgtagaaaacttaagatctttgttttgtataaaactacattg |
20117502 |
T |
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| Q |
232 |
gcttgactatgtgtattgtggaa |
254 |
Q |
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| T |
20117503 |
gattgagtatgtgtattgcggaa |
20117525 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 1 - 129
Target Start/End: Original strand, 20016081 - 20016209
Alignment:
| Q |
1 |
taatgtttttcccttttcctgggattgaaggtaatagaagcagctcgccctggtctattccaagagaagagtactgtagtatgtatgtgtttggactttt |
100 |
Q |
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| T |
20016081 |
taatgtttttcccttttctagggtttaaaggtactagaagcagctcacacttgtttgttccaagagaagagcaatgtaataggtatgtgtttggactttt |
20016180 |
T |
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| Q |
101 |
agactcatttaggattgtttcccaaaaaa |
129 |
Q |
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| T |
20016181 |
agactcatttaggtttgtttcccaaaaaa |
20016209 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 53 - 129
Target Start/End: Original strand, 20035273 - 20035349
Alignment:
| Q |
53 |
gtctattccaagagaagagtactgtagtatgtatgtgtttggacttttagactcatttaggattgtttcccaaaaaa |
129 |
Q |
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| T |
20035273 |
gtctattccaagagaagagcaatgtaataggtatgcgtttggaattttagactcatttaggtttgtttcccaaaaaa |
20035349 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 85; Significance: 2e-40; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 1 - 97
Target Start/End: Original strand, 22192481 - 22192577
Alignment:
| Q |
1 |
taatgtttttcccttttcctgggattgaaggtaatagaagcagctcgccctggtctattccaagagaagagtactgtagtatgtatgtgtttggact |
97 |
Q |
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| T |
22192481 |
taatgttttccccttttcctgggtttgaaggtaatagaagcagctcgccctggtctattccaagagaagagcactgtagtatgtatgtgtttggact |
22192577 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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