View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19803_low_2 (Length: 672)
Name: NF19803_low_2
Description: NF19803
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19803_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 589; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 589; E-Value: 0
Query Start/End: Original strand, 1 - 656
Target Start/End: Complemental strand, 5345377 - 5344721
Alignment:
| Q |
1 |
acagggtaaagattgccctcgtttataaacatttattcaggtcatctcttaaccgatgtgagacattaacgaaccttgatgtgatgtagcaactacactt |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
5345377 |
acagggtaaagattgccctcgtttataaacatttattcaggtcatctcttaaccgatgtgaaacattaacgaaccttgatgtgatgtagcaactacactt |
5345278 |
T |
|
| Q |
101 |
aatccttggttcataacaagattatgaaaaaggcttctctattataattttgacaacaatgtgaagatttttatggtccttgctgcatcatattgttaca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5345277 |
aatccttggttcataacaagattatgaaaaaggcttctctattataattttgacaacaatgtgaagatttttatggtccttgctgcatcatattgttaca |
5345178 |
T |
|
| Q |
201 |
gctgtaattgcagctgtatcatattggattgcaattttctgcaatttcatttgaaaacatagttatgagttgattctaacatcaagcatagtcgagactt |
300 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5345177 |
gctgtaattgcagttgtatcatattggattgcaattttctgcaatttcatttgaaaacatagttatgagttgattctaacatcaagcatagtcgagactt |
5345078 |
T |
|
| Q |
301 |
gataatttccctcaaaacttgagttttttgaaatcatacaagtattttatatgaacctttcaagtatatattcaactaaactcccttttttgttgacaac |
400 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||| ||| |
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| T |
5345077 |
gataatttccctcaaaacttgagttttttgaaatcatacaagtattttatatgaacctttcaagtatatattcaactaaacacacttttttgttgctaac |
5344978 |
T |
|
| Q |
401 |
caatcagatttgactggtacaacaacaccaattgcagaaagcaggaaattgaaggtatgaatgttttttaaaattcattctcttccgctcttgaatcaat |
500 |
Q |
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| T |
5344977 |
tgatcagatttggctggtacaacaacaccaattgcagaaagcaggaaattgaaggtatgaatgttttttaaaattcattctcttccgctcttgaatcaat |
5344878 |
T |
|
| Q |
501 |
accaacacatgcagttacattatattatttcacttttataaattattactagtgtcatgttagtgcttcataaactagatgaccaagt-nnnnnnnntgt |
599 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
5344877 |
accaacacatgcagttacattatattatttcacttttataaattattactagtgtcatgttagtgcttcataaactagatgaccaagtaaaaaaaaatgt |
5344778 |
T |
|
| Q |
600 |
gaaattgtgtatttttaagggttcctttcattgaattttcaggaaaatggtcatagt |
656 |
Q |
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| T |
5344777 |
gaaattgtgtatttttaagggttcctttcattgaattttcaggaaaatggtcatagt |
5344721 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 423 - 582
Target Start/End: Complemental strand, 5332011 - 5331846
Alignment:
| Q |
423 |
caacaccaattgcagaaagcaggaaattgaaggtatgaatgttttttaaaattcattctcttccgctcttgaatcaataccaacacatgcagttacatta |
522 |
Q |
| |
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||||||||||||||| |||||||||| ||||||||||| ||||||| ||||||||| |||||| || | || ||||| ||||||||| ||||||||| |
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| T |
5332011 |
caacaccaattgcagtaagcaggaaactgaaggtatgattgtttttcaaaattcatactcttcatctttggattcaatggcaacacatgtagttacattc |
5331912 |
T |
|
| Q |
523 |
tattatttcacttttataaattattactagtgt------catgttagtgcttcataaactagatga |
582 |
Q |
| |
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||||| || | ||| | |||||||| | ||||| ||||||||| ||||||||||||||||| |
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| T |
5331911 |
tattaatttaatttcacaaattatttccagtgtcatatgcatgttagtacttcataaactagatga |
5331846 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 423 - 582
Target Start/End: Complemental strand, 5349730 - 5349565
Alignment:
| Q |
423 |
caacaccaattgcagaaagcaggaaattgaaggtatgaatgttttttaaaattcattctcttccgctcttgaatcaataccaacacatgcagttacatta |
522 |
Q |
| |
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||||||||||||||| |||||||||| ||||||||||| ||||||| ||||||||| |||||| || | || ||||| ||||||||| ||||||||| |
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| T |
5349730 |
caacaccaattgcagtaagcaggaaactgaaggtatgattgtttttcaaaattcatactcttcatctttggattcaatggcaacacatgtagttacattc |
5349631 |
T |
|
| Q |
523 |
tattatttcacttttataaattattactagtgt------catgttagtgcttcataaactagatga |
582 |
Q |
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||||| || | ||| | |||||||| | ||||| ||||||||| ||||||||||||||||| |
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| T |
5349630 |
tattaatttaatttcacaaattatttccagtgtcatatgcatgttagtacttcataaactagatga |
5349565 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 23 - 67
Target Start/End: Original strand, 33702283 - 33702327
Alignment:
| Q |
23 |
ttataaacatttattcaggtcatctcttaaccgatgtgagacatt |
67 |
Q |
| |
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| T |
33702283 |
ttataaacatttattcatgtcatctctcaaccgatgtgagacatt |
33702327 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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