View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19803_low_20 (Length: 315)
Name: NF19803_low_20
Description: NF19803
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19803_low_20 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 252; Significance: 1e-140; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 19 - 299
Target Start/End: Original strand, 6300645 - 6300931
Alignment:
| Q |
19 |
ctgttatttctaatatacccctttaaagtcttttgtagttttcaatcacctattgaaatacacgtacaccaatacatttcaattcaattctccataatgc |
118 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6300645 |
ctgttattcctaatatacccctttaaagtcttttgtagttttcaatcacctattgaaatacacgtacaccaatacatttcaattcaattctccataatgc |
6300744 |
T |
|
| Q |
119 |
attcatttgaattcttcataacagcttttcataactcttggtgtacccaatacatcttcttcttttcaattataaaaactcatttaacttatatttggtg |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
6300745 |
attcatttgaattcttcataacagcttttcataactcttggtgtacccaatacatcttcttcttttcaattataaaaattcatttaacttatatttggtg |
6300844 |
T |
|
| Q |
219 |
ttaagaagc------gccttgcatataattgaattgatgtttccaatgccttgcatattttcaacgtgaggtgggaaaccagaaggt |
299 |
Q |
| |
|
||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6300845 |
ttaagaagctgaaatgtcttgcatataattgaattgatgtttccaatgccttgcatattttcaacgtgaggtgggaaaccagaaggt |
6300931 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 173; Significance: 5e-93; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 173; E-Value: 5e-93
Query Start/End: Original strand, 19 - 203
Target Start/End: Original strand, 25995386 - 25995570
Alignment:
| Q |
19 |
ctgttatttctaatatacccctttaaagtcttttgtagttttcaatcacctattgaaatacacgtacaccaatacatttcaattcaattctccataatgc |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25995386 |
ctgttatttctaatatacccctttaaagtcttttgtggttttcaatcacctattggaatacacgtacaccaatacatttcaattcaattctccataatgc |
25995485 |
T |
|
| Q |
119 |
attcatttgaattcttcataacagcttttcataactcttggtgtacccaatacatcttcttcttttcaattataaaaactcattt |
203 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25995486 |
attcatttcaattcttcataacagcttttcataactcttggtgtacccaatacatcttcttcttttcaattataaaaactcattt |
25995570 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 230 - 299
Target Start/End: Original strand, 25997992 - 25998061
Alignment:
| Q |
230 |
cttgcatataattgaattgatgtttccaatgccttgcatattttcaacgtgaggtgggaaaccagaaggt |
299 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25997992 |
cttgcatataattgaattgatgtttccaatgccttgcatattttcaacgtgaggtgggaaaccagaaggt |
25998061 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 169; Significance: 1e-90; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 19 - 203
Target Start/End: Complemental strand, 24744192 - 24744008
Alignment:
| Q |
19 |
ctgttatttctaatatacccctttaaagtcttttgtagttttcaatcacctattgaaatacacgtacaccaatacatttcaattcaattctccataatgc |
118 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24744192 |
ctgttattcctaatatacccctttaaagtcttttgtggttttcaatcacctattggaatacacgtacaccaatacatttcaattcaattctccataatgc |
24744093 |
T |
|
| Q |
119 |
attcatttgaattcttcataacagcttttcataactcttggtgtacccaatacatcttcttcttttcaattataaaaactcattt |
203 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24744092 |
attcatttcaattcttcataacagcttttcataactcttggtgtacccaatacatcttcttcttttcaattataaaaactcattt |
24744008 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 209 - 299
Target Start/End: Complemental strand, 24740623 - 24740527
Alignment:
| Q |
209 |
atatttggtgttaagaagc------gccttgcatataattgaattgatgtttccaatgccttgcatattttcaacgtgaggtgggaaaccagaaggt |
299 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24740623 |
atatttggtgttaagaagctgaaatgccttgcatataattgaattgatgtttccaatgtcttgcatattttcaacgtgaggtgggaaaccagaaggt |
24740527 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 19 - 79
Target Start/End: Complemental strand, 4204853 - 4204793
Alignment:
| Q |
19 |
ctgttatttctaatatacccctttaaagtcttttgtagttttcaatcacctattgaaatac |
79 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||| |||||||| ||||| ||| ||||| |
|
|
| T |
4204853 |
ctgttattcctaatatacccctttaaagtcttttgtggttttcaaacacctcttggaatac |
4204793 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 253 - 300
Target Start/End: Complemental strand, 4201369 - 4201323
Alignment:
| Q |
253 |
ttccaatgccttgcatattttcaacgtgaggtgggaaaccagaaggtg |
300 |
Q |
| |
|
||||| ||||||||||||||||| ||||||||||||||||| |||||| |
|
|
| T |
4201369 |
ttccactgccttgcatattttca-cgtgaggtgggaaaccaaaaggtg |
4201323 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 158; Significance: 4e-84; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 22 - 203
Target Start/End: Original strand, 40285328 - 40285509
Alignment:
| Q |
22 |
ttatttctaatatacccctttaaagtcttttgtagttttcaatcacctattgaaatacacgtacaccaatacatttcaattcaattctccataatgcatt |
121 |
Q |
| |
|
||||| ||||||||||||||||||||||||||| | |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40285328 |
ttattcctaatatacccctttaaagtcttttgtggatttcaatcacctattggaatacacgtacaccaatacatttcaattcaattctccataatgcatt |
40285427 |
T |
|
| Q |
122 |
catttgaattcttcataacagcttttcataactcttggtgtacccaatacatcttcttcttttcaattataaaaactcattt |
203 |
Q |
| |
|
||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40285428 |
catttcaattcttcataacaacttttcataactcttggtgtacccaatacatcttcttcttttcaattataaaaactcattt |
40285509 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 209 - 299
Target Start/End: Original strand, 40288895 - 40288991
Alignment:
| Q |
209 |
atatttggtgttaagaagc------gccttgcatataattgaattgatgtttccaatgccttgcatattttcaacgtgaggtgggaaaccagaaggt |
299 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40288895 |
atatttggtgttaagaagctgaaatgccttgcatataattgaattgatgtttccaatgccttgcatattttcaacgtgaggtgggaaaccagaaggt |
40288991 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University