View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19803_low_22 (Length: 297)
Name: NF19803_low_22
Description: NF19803
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19803_low_22 |
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Alignment Details
Target: chr3 (Bit Score: 236; Significance: 1e-130; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 18 - 286
Target Start/End: Original strand, 4526687 - 4526951
Alignment:
| Q |
18 |
aatagtctctaaaatatatgaaaaacttgtaggattatgttccaaaccagcgcttctctcaatatcccaacctttaagtatgtaggggcttcaaagcttg |
117 |
Q |
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| T |
4526687 |
aatagtctctaaaatatatgaaaaacttgtaggattatgttccaaaccagcgcttctcttaatatcccaacctttaagtatgtaggggcttcaaagcttg |
4526786 |
T |
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| Q |
118 |
actaacaagccagaaatttgactttgagaaagtttgttcctttcccaacaagaggatgtataaatctccaagtcaggcgcggccggcagcgcacttttcc |
217 |
Q |
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| T |
4526787 |
actaacaagcgagaaatttgactttgagaaagtttgttcctttcccaacaggaggatgtataaatctccaagtcaggcg----cggcagcgcacttttcc |
4526882 |
T |
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| Q |
218 |
attgctttctctaataggagctcgaaaaccggtacttgtctaggctgagaagtttcatattcatctcac |
286 |
Q |
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| T |
4526883 |
attgctttctctaataggagctcgaaaaccggtacttgtctaggctgagaagtttcatattcatgtcac |
4526951 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 21 - 181
Target Start/End: Original strand, 4495376 - 4495533
Alignment:
| Q |
21 |
agtctctaaaatatatgaaaaacttgtaggattatgttccaaaccagcgcttctctcaatatcccaacctttaagtatgtaggggcttcaaagcttgact |
120 |
Q |
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| T |
4495376 |
agtctctaaaatatatgaaaaacttgtaggattatgttccaaactg----ttcttttaatatcccaacctttaagtaagtaggggcttcaaagcttgact |
4495471 |
T |
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| Q |
121 |
aacaagccagaaatttgac-tttgagaaagtttgttcctttcccaacaagaggatgtataaa |
181 |
Q |
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| T |
4495472 |
aacaatcgagaaagttgacatttcagaaagttccttcctctccaaacaagaggatgtataaa |
4495533 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 61 - 151
Target Start/End: Complemental strand, 465887 - 465796
Alignment:
| Q |
61 |
aaaccagcgcttctctcaatatcccaacctttaagtatgtagggg-cttcaaagcttgactaacaagccagaaatttgactttgagaaagtt |
151 |
Q |
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|||||||||||||| | |||||||||||| | ||| | ||||||| ||||||||||||||||| |||| ||||| || ||||||||| |||| |
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| T |
465887 |
aaaccagcgcttcttttaatatcccaaccataaagaaagtagggggcttcaaagcttgactaataagcgagaaagtttactttgagacagtt |
465796 |
T |
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