View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19803_low_25 (Length: 249)
Name: NF19803_low_25
Description: NF19803
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19803_low_25 |
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Alignment Details
Target: chr5 (Bit Score: 160; Significance: 2e-85; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 12 - 175
Target Start/End: Original strand, 10045055 - 10045218
Alignment:
| Q |
12 |
atactagtgtaatttgtaaatataatataacaaatacatgtttaaatgttatttgagcctcaaaatcttttatgccttgaaccgaatcatcattttctca |
111 |
Q |
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| T |
10045055 |
atactagtgtaatttgtaaatataatataacaaatacatgtttaaatgttatttgagccttaaaatcttttatgccttgaaccgaatcatcattttctca |
10045154 |
T |
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| Q |
112 |
ccttaattttgtgaataaaaataaatattatatttaaatgtgaaattacatccattttaagtaa |
175 |
Q |
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| T |
10045155 |
ccttaattttgtgaataaaaataaatattatatttaaatgtgaaattacatccattttaagtaa |
10045218 |
T |
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Target: chr5; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 171 - 249
Target Start/End: Original strand, 10045256 - 10045335
Alignment:
| Q |
171 |
agtaaattgaaaatagaaggtataattcataaaa-gaggtaataaaaagagactaacaagtttgtttaagattctcgaga |
249 |
Q |
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| T |
10045256 |
agtaaattgaaaatagaaggtataaatcataaaaagaggtaataaagagagactaataagtttgtttaaggttctcgaga |
10045335 |
T |
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