View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19803_low_26 (Length: 238)
Name: NF19803_low_26
Description: NF19803
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19803_low_26 |
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| [»] scaffold0372 (1 HSPs) |
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Alignment Details
Target: scaffold0372 (Bit Score: 162; Significance: 1e-86; HSPs: 1)
Name: scaffold0372
Description:
Target: scaffold0372; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 18 - 225
Target Start/End: Complemental strand, 2257 - 2050
Alignment:
| Q |
18 |
attgttatatgagctagacattataaactaaatcatgaaattaattatgaaagaataagcnnnnnnnnnngaagttgaatttacacgcataccaaaccct |
117 |
Q |
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| T |
2257 |
attgttatatgagctagacattataaactaaatcatgaaattaattatgaaagtataagcaaaaaaaaaaaaagttgaatttacacgcataccaaaccct |
2158 |
T |
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| Q |
118 |
ttgaaccattaaagggggcaataggacgaggaagcaaaatactacctagtcaagataaaacaaaccaaaataaaggacataacacaatgacgttgacgac |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2157 |
ttgaaccattaaagggggcaataggacgaggaagcaaaatactacctagtcaaaataaaacaaaccaaaataaaggacataacacaatgacgttgacgac |
2058 |
T |
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| Q |
218 |
agaataat |
225 |
Q |
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| |||||| |
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| T |
2057 |
aaaataat |
2050 |
T |
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Target: chr4 (Bit Score: 155; Significance: 2e-82; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 18 - 225
Target Start/End: Original strand, 21449279 - 21449487
Alignment:
| Q |
18 |
attgttatatgagctagacattataaactaaatcatgaaattaattatgaaagaataagcnnnnnnnnnngaa-gttgaatttacacgcataccaaaccc |
116 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| || |||||||||||||||||||||||||| |
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| T |
21449279 |
attgttatatgagctagacattataaactaaatcatgaaattaattatgaaagtataagcaaaaaaaaaaaaaagttgaatttacacgcataccaaaccc |
21449378 |
T |
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| Q |
117 |
tttgaaccattaaagggggcaataggacgaggaagcaaaatactacctagtcaagataaaacaaaccaaaataaaggacataacacaatgacgttgacga |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21449379 |
tttgaaccattaaagggggcaataggacgaggaagcaaaatactacctagtcaaaataaaacaaaccaaaataaaggacataacacaatgacgttgacga |
21449478 |
T |
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| Q |
217 |
cagaataat |
225 |
Q |
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|| |||||| |
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| T |
21449479 |
caaaataat |
21449487 |
T |
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