View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19803_low_27 (Length: 233)

Name: NF19803_low_27
Description: NF19803
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19803_low_27
NF19803_low_27
[»] chr8 (2 HSPs)
chr8 (7-213)||(35680870-35681076)
chr8 (50-205)||(35686139-35686293)
[»] chr3 (7 HSPs)
chr3 (53-213)||(23669421-23669581)
chr3 (53-213)||(24041697-24041857)
chr3 (76-213)||(23685130-23685264)
chr3 (76-213)||(24057367-24057501)
chr3 (67-175)||(23674163-23674271)
chr3 (67-175)||(24046439-24046547)
chr3 (58-169)||(52548627-52548738)


Alignment Details
Target: chr8 (Bit Score: 207; Significance: 1e-113; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 7 - 213
Target Start/End: Complemental strand, 35681076 - 35680870
Alignment:
Q  7 ataatactcaaactcaaaaaatgcagagaatgtgtatgacaggctaattagtacctgaaacaagaaatatttgcaatgatcattagaaagtggctgagta 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35681076 ataatactcaaactcaaaaaatgcagagaatgtgtatgacaggctaattagtacctgaaacaagaaatatttgcaatgatcattagaaagtggctgagta 35680977  T
Q  107 gacttgataatttgatgaagatctgtttccatgagttcataaaccaagtagacatccttaaaacttgttctatgtaccggcatcataacatctttcaaag 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35680976 gacttgataatttgatgaagatctgtttccatgagttcataaaccaagtagacatccttaaaacttgttctatgtaccggcatcataacatctttcaaag 35680877  T
Q  207 caatcac 213  Q
    |||||||    
T  35680876 caatcac 35680870  T

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Target: chr8; HSP #2
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 50 - 205
Target Start/End: Complemental strand, 35686293 - 35686139
Alignment:
Q  50 ctaattagtacctgaaacaagaaatatttgcaatgatcattagaaagtggctgagtagacttgataatttgatgaagatctgtttccatgagttcataaa 149  Q
    |||||||||||| ||||||| |||||| |||||  |||||||||||||| |||||  ||||| ||||| |||||||||||||| ||||||||||||||||    
T  35686293 ctaattagtacccgaaacaaaaaatatctgcaaatatcattagaaagtgactgagcggactttataatctgatgaagatctgtatccatgagttcataaa 35686194  T
Q  150 ccaagtagacatccttaaaacttgttctatgtaccggcatcataacatctttcaaa 205  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  35686193 ccaagtagacatccttaaaacttgttctatgtaccggcatcataa-atctttcaaa 35686139  T

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Target: chr3 (Bit Score: 69; Significance: 4e-31; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 53 - 213
Target Start/End: Original strand, 23669421 - 23669581
Alignment:
Q  53 attagtacctgaaacaagaaatatttgcaatgatcattagaaagtggctgagtagacttgataatttgatgaagatctgtttccatgagttcataaacca 152  Q
    |||||||||||||  |||||   ||||||||||| ||| |||||||||| ||  |||||||||||  ||||||| ||| | |||||||||||||| ||||    
T  23669421 attagtacctgaactaagaagagtttgcaatgattattggaaagtggcttagaggacttgataatacgatgaaggtctttatccatgagttcatagacca 23669520  T
Q  153 agtagacatccttaaaacttgttctatgtaccggcatcataacatctttcaaagcaatcac 213  Q
    ||||||||||||||||||||||||| ||  | || |||||||||||||||| || ||||||    
T  23669521 agtagacatccttaaaacttgttctttggtctggtatcataacatctttcagagaaatcac 23669581  T

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Target: chr3; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 53 - 213
Target Start/End: Original strand, 24041697 - 24041857
Alignment:
Q  53 attagtacctgaaacaagaaatatttgcaatgatcattagaaagtggctgagtagacttgataatttgatgaagatctgtttccatgagttcataaacca 152  Q
    |||||||||||||  |||||   ||||||||||| ||| |||||||||| ||  |||||||||||  ||||||| ||| | |||||||||||||| ||||    
T  24041697 attagtacctgaactaagaagagtttgcaatgattattggaaagtggcttagaggacttgataatacgatgaaggtctttatccatgagttcatagacca 24041796  T
Q  153 agtagacatccttaaaacttgttctatgtaccggcatcataacatctttcaaagcaatcac 213  Q
    ||||||||||||||||||||||||| ||  | || |||||||||||||||| || ||||||    
T  24041797 agtagacatccttaaaacttgttctttggtctggtatcataacatctttcagagaaatcac 24041857  T

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Target: chr3; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 76 - 213
Target Start/End: Original strand, 23685130 - 23685264
Alignment:
Q  76 tttgcaatgatcattagaaagtggctgagtagacttgataatttgatgaagatctgtttccatgagttcataaaccaagtagacatccttaaaacttgtt 175  Q
    ||||||||||||||| |||||||||| ||  ||||| |||    ||||||||||| | ||||||| |||||| |||||||||| ||||||||||||||||    
T  23685130 tttgcaatgatcattggaaagtggcttagaggacttaatac---gatgaagatctttatccatgaattcatagaccaagtagatatccttaaaacttgtt 23685226  T
Q  176 ctatgtaccggcatcataacatctttcaaagcaatcac 213  Q
    || ||  |||| |||||||||||||||| |||||||||    
T  23685227 ctttggtccggtatcataacatctttcagagcaatcac 23685264  T

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Target: chr3; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 76 - 213
Target Start/End: Original strand, 24057367 - 24057501
Alignment:
Q  76 tttgcaatgatcattagaaagtggctgagtagacttgataatttgatgaagatctgtttccatgagttcataaaccaagtagacatccttaaaacttgtt 175  Q
    ||||||||||||||| |||||||||| ||  ||||| |||    ||||||||||| | ||||||| |||||| |||||||||| ||||||||||||||||    
T  24057367 tttgcaatgatcattggaaagtggcttagaggacttaatac---gatgaagatctttatccatgaattcatagaccaagtagatatccttaaaacttgtt 24057463  T
Q  176 ctatgtaccggcatcataacatctttcaaagcaatcac 213  Q
    || ||  |||| |||||||||||||||| |||||||||    
T  24057464 ctttggtccggtatcataacatctttcagagcaatcac 24057501  T

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Target: chr3; HSP #5
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 67 - 175
Target Start/End: Original strand, 23674163 - 23674271
Alignment:
Q  67 caagaaatatttgcaatgatcattagaaagtggctgagtagacttgataatttgatgaagatctgtttccatgagttcataaaccaagtagacatcctta 166  Q
    ||||||||||| |||||||||||| |||| | ||||||  ||||| ||||| ||| ||| ||  || ||||| |||||||| ||||||||||||||||||    
T  23674163 caagaaatattggcaatgatcattggaaattcgctgagaggacttcataatatgacgaatattagtatccattagttcatagaccaagtagacatcctta 23674262  T
Q  167 aaacttgtt 175  Q
    |||| ||||    
T  23674263 aaacatgtt 23674271  T

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Target: chr3; HSP #6
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 67 - 175
Target Start/End: Original strand, 24046439 - 24046547
Alignment:
Q  67 caagaaatatttgcaatgatcattagaaagtggctgagtagacttgataatttgatgaagatctgtttccatgagttcataaaccaagtagacatcctta 166  Q
    ||||||||||| |||||||||||| |||| | ||||||  ||||| ||||| ||| ||| ||  || ||||| |||||||| ||||||||||||||||||    
T  24046439 caagaaatattggcaatgatcattggaaattcgctgagaggacttcataatatgacgaatattagtatccattagttcatagaccaagtagacatcctta 24046538  T
Q  167 aaacttgtt 175  Q
    |||| ||||    
T  24046539 aaacatgtt 24046547  T

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Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 58 - 169
Target Start/End: Complemental strand, 52548738 - 52548627
Alignment:
Q  58 tacctgaaacaagaaatatttgcaatgatcattagaaagtggctgagtagacttgataatttgatgaagatctgtttccatgagttcataaaccaagtag 157  Q
    ||||||||| | |||||||| ||| ||||||||||||||||  || | |||||| ||||| ||||| | ||| || ||||||||||||||||| |  ||     
T  52548738 tacctgaaagaggaaatattggcagtgatcattagaaagtgcttgggaagacttaataatctgatgcaaatcggtgtccatgagttcataaacaagataa 52548639  T
Q  158 acatccttaaaa 169  Q
    ||||||||||||    
T  52548638 acatccttaaaa 52548627  T

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