View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19803_low_28 (Length: 228)

Name: NF19803_low_28
Description: NF19803
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19803_low_28
NF19803_low_28
[»] chr1 (4 HSPs)
chr1 (1-89)||(35583280-35583368)
chr1 (166-212)||(35583626-35583672)
chr1 (2-50)||(1815306-1815354)
chr1 (3-50)||(43492457-43492504)
[»] chr6 (1 HSPs)
chr6 (3-50)||(16766757-16766804)
[»] chr5 (1 HSPs)
chr5 (3-50)||(7677765-7677812)
[»] chr3 (1 HSPs)
chr3 (3-50)||(40993298-40993345)
[»] chr2 (1 HSPs)
chr2 (3-50)||(2438682-2438729)
[»] chr7 (2 HSPs)
chr7 (17-50)||(7197274-7197307)
chr7 (3-47)||(8234198-8234242)
[»] scaffold0053 (1 HSPs)
scaffold0053 (2-50)||(8847-8895)
[»] chr4 (1 HSPs)
chr4 (2-50)||(34306766-34306814)


Alignment Details
Target: chr1 (Bit Score: 81; Significance: 3e-38; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 35583280 - 35583368
Alignment:
Q  1 tagattaggcgtgacacggtgtcggacatgtgttgtgtcagacaccgacaacaacactgacaagtatgattagacttaattaagtggtg 89  Q
    ||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35583280 tagattaggcgtgacacagtgtcgggcatgtgttgtgtcagacaccgacaacaacactgacaagtatgattagacttaattaagtggtg 35583368  T

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Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 166 - 212
Target Start/End: Original strand, 35583626 - 35583672
Alignment:
Q  166 cctggacggagtttgtttgtggcggtggtgggcaactgcgttgagtt 212  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||    
T  35583626 cctggacggagtttgtttgtggcggaggtgggcaactgcgttgagtt 35583672  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 50
Target Start/End: Complemental strand, 1815354 - 1815306
Alignment:
Q  2 agattaggcgtgacacggtgtcggacatgtgttgtgtcagacaccgaca 50  Q
    |||||||||||| | ||||||||||||||||| ||||| ||||||||||    
T  1815354 agattaggcgtgtcccggtgtcggacatgtgtcgtgtcggacaccgaca 1815306  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 3 - 50
Target Start/End: Original strand, 43492457 - 43492504
Alignment:
Q  3 gattaggcgtgacacggtgtcggacatgtgttgtgtcagacaccgaca 50  Q
    |||||||||||   ||||||||||||||||||||||| ||||||||||    
T  43492457 gattaggcgtgtgccggtgtcggacatgtgttgtgtctgacaccgaca 43492504  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 3 - 50
Target Start/End: Complemental strand, 16766804 - 16766757
Alignment:
Q  3 gattaggcgtgacacggtgtcggacatgtgttgtgtcagacaccgaca 50  Q
    ||||||||||| | |||||||||||| |||||||||| ||||||||||    
T  16766804 gattaggcgtgtcccggtgtcggacacgtgttgtgtccgacaccgaca 16766757  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 3 - 50
Target Start/End: Complemental strand, 7677812 - 7677765
Alignment:
Q  3 gattaggcgtgacacggtgtcggacatgtgttgtgtcagacaccgaca 50  Q
    ||||||||||| | ||||||||||||||||  ||||||||||||||||    
T  7677812 gattaggcgtgtcccggtgtcggacatgtgacgtgtcagacaccgaca 7677765  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 3 - 50
Target Start/End: Original strand, 40993298 - 40993345
Alignment:
Q  3 gattaggcgtgacacggtgtcggacatgtgttgtgtcagacaccgaca 50  Q
    ||||||||||| | ||||||||||||||||| ||||| ||||||||||    
T  40993298 gattaggcgtgtcccggtgtcggacatgtgtcgtgtccgacaccgaca 40993345  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 3 - 50
Target Start/End: Original strand, 2438682 - 2438729
Alignment:
Q  3 gattaggcgtgacacggtgtcggacatgtgttgtgtcagacaccgaca 50  Q
    ||||||||||| | ||||||||||||||||| ||||| ||||||||||    
T  2438682 gattaggcgtgtcccggtgtcggacatgtgtcgtgtccgacaccgaca 2438729  T

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Target: chr7 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 50
Target Start/End: Original strand, 7197274 - 7197307
Alignment:
Q  17 cggtgtcggacatgtgttgtgtcagacaccgaca 50  Q
    ||||||||||||||||||||||| ||||||||||    
T  7197274 cggtgtcggacatgtgttgtgtccgacaccgaca 7197307  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 47
Target Start/End: Complemental strand, 8234242 - 8234198
Alignment:
Q  3 gattaggcgtgacacggtgtcggacatgtgttgtgtcagacaccg 47  Q
    ||||||||||| | ||||||||||||||||| ||||| |||||||    
T  8234242 gattaggcgtgtctcggtgtcggacatgtgtcgtgtccgacaccg 8234198  T

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Target: scaffold0053 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0053
Description:

Target: scaffold0053; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 50
Target Start/End: Complemental strand, 8895 - 8847
Alignment:
Q  2 agattaggcgtgacacggtgtcggacatgtgttgtgtcagacaccgaca 50  Q
    |||||||||||| | |||||||||||| |||| ||||| ||||||||||    
T  8895 agattaggcgtgtctcggtgtcggacacgtgtcgtgtccgacaccgaca 8847  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 50
Target Start/End: Original strand, 34306766 - 34306814
Alignment:
Q  2 agattaggcgtgacacggtgtcggacatgtgttgtgtcagacaccgaca 50  Q
    |||||||||||| | |||||||||||| |||| ||||| ||||||||||    
T  34306766 agattaggcgtgtctcggtgtcggacacgtgtcgtgtccgacaccgaca 34306814  T

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