View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19803_low_29 (Length: 227)
Name: NF19803_low_29
Description: NF19803
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19803_low_29 |
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Alignment Details
Target: chr6 (Bit Score: 165; Significance: 2e-88; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 1 - 185
Target Start/End: Complemental strand, 8158835 - 8158651
Alignment:
| Q |
1 |
accctccataaatacttctatccccttatatctctcatcactgatgataattggtacaaatttccttgccatagttgccctccgaattgcatcatcaaga |
100 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||| ||| |
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| T |
8158835 |
accctccataaatacttctatcccctcatatctctcatcacttatgataattggtacaaatttccttgctatagttgccctccgaattgcatcatccaga |
8158736 |
T |
|
| Q |
101 |
taagactctggaatttggctgccaccatgaagagcttcagaaattttatcatcaacctctgatacaatttcaatgagttcgtgtc |
185 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
8158735 |
taagactctggaatttggctgccaccatgaagagcttcagaaattttatcatcaatctctgatacaatttcaatgagttcgtgtc |
8158651 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 145; Significance: 2e-76; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 1 - 181
Target Start/End: Original strand, 4084639 - 4084819
Alignment:
| Q |
1 |
accctccataaatacttctatccccttatatctctcatcactgatgataattggtacaaatttccttgccatagttgccctccgaattgcatcatcaaga |
100 |
Q |
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|||||||||||||| || || ||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||| |||| ||| |
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| T |
4084639 |
accctccataaatagttttaacccctcatatctctcatcactgatgataattggtacaaatttccttgctatagttgccctacgaattgcaccatcgaga |
4084738 |
T |
|
| Q |
101 |
taagactctggaatttggctgccaccatgaagagcttcagaaattttatcatcaacctctgatacaatttcaatgagttcg |
181 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
4084739 |
taagactctggaatttggctgccaccatgaagagcttcataaattttatcatcaacctctgatacaatttcaatgagttcg |
4084819 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 113; Significance: 2e-57; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 1 - 185
Target Start/End: Original strand, 44317166 - 44317350
Alignment:
| Q |
1 |
accctccataaatacttctatccccttatatctctcatcactgatgataattggtacaaatttccttgccatagttgccctccgaattgcatcatcaaga |
100 |
Q |
| |
|
|||||||||||||| ||||| ||||| || |||||||||||| | ||||||||||||||||||| ||| ||||||||||| |||||||||||||| ||| |
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| T |
44317166 |
accctccataaatagttctaacccctcatttctctcatcactaaagataattggtacaaatttcattgatatagttgccctacgaattgcatcatcgaga |
44317265 |
T |
|
| Q |
101 |
taagactctggaatttggctgccaccatgaagagcttcagaaattttatcatcaacctctgatacaatttcaatgagttcgtgtc |
185 |
Q |
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|
||||||| |||||||||| |||||||||| ||||||||||| |||||||||||||||||||||||||| |||||||||||||| |
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| T |
44317266 |
acagactctagaatttggcttccaccatgaaaagcttcagaaagtttatcatcaacctctgatacaatttgaatgagttcgtgtc |
44317350 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 49 - 181
Target Start/End: Original strand, 44301930 - 44302062
Alignment:
| Q |
49 |
aattggtacaaatttccttgccatagttgccctccgaattgcatcatcaagataagactctggaatttggctgccaccatgaagagcttcagaaatttta |
148 |
Q |
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|
||||||||||||||||||||| || ||||||| |||||||||||||| |||||||||||| |||||||||| |||||||||| ||||||||||| |||| |
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| T |
44301930 |
aattggtacaaatttccttgctatggttgccccacgaattgcatcatcgagataagactctagaatttggcttccaccatgaaaagcttcagaaagttta |
44302029 |
T |
|
| Q |
149 |
tcatcaacctctgatacaatttcaatgagttcg |
181 |
Q |
| |
|
||||||||||| ||||||||||||||||||||| |
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|
| T |
44302030 |
tcatcaacctccgatacaatttcaatgagttcg |
44302062 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 44 - 180
Target Start/End: Original strand, 44307027 - 44307163
Alignment:
| Q |
44 |
atgataattggtacaaatttccttgccatagttgccctccgaattgcatcatcaagataagactctggaatttggctgccaccatgaagagcttcagaaa |
143 |
Q |
| |
|
|||| ||||||||||||||||| ||| || |||||||| |||||||||||||| ||| |||||||| |||||||||||||||||||| | ||||||||| |
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| T |
44307027 |
atgaaaattggtacaaatttccgtgctatggttgccctacgaattgcatcatcgagaacagactctgaaatttggctgccaccatgaaaatcttcagaaa |
44307126 |
T |
|
| Q |
144 |
ttttatcatcaacctctgatacaatttcaatgagttc |
180 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
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|
| T |
44307127 |
gtttatcatcaacctctgatacaatttcaatgagttc |
44307163 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 44 - 181
Target Start/End: Original strand, 43896573 - 43896710
Alignment:
| Q |
44 |
atgataattggtacaaatttccttgccatagttgccctccgaattgcatcatcaagataagactctggaatttggctgccaccatgaagagcttcagaaa |
143 |
Q |
| |
|
|||| |||||||||||||||| ||| ||||||||||| |||||||||||||| ||| ||| |||| ||||||||||||||| |||| ||||||||||| |
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| T |
43896573 |
atgaaaattggtacaaatttcattgatatagttgccctacgaattgcatcatcgagaacagattctgaaatttggctgccaccgtgaaaagcttcagaaa |
43896672 |
T |
|
| Q |
144 |
ttttatcatcaacctctgatacaatttcaatgagttcg |
181 |
Q |
| |
|
|||||||||||||||||| || ||||||||||||||| |
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| T |
43896673 |
gtttatcatcaacctctgagacgatttcaatgagttcg |
43896710 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 94; Significance: 5e-46; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 32 - 181
Target Start/End: Original strand, 18702160 - 18702309
Alignment:
| Q |
32 |
ctctcatcactgatgataattggtacaaatttccttgccatagttgccctccgaattgcatcatcaagataagactctggaatttggctgccaccatgaa |
131 |
Q |
| |
|
|||||||||| ||||||||||||||||||||| ||| ||||||||||| |||||||||||||| ||| |||||||||||||| |||||||||||||| |
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| T |
18702160 |
ctctcatcaccaatgataattggtacaaatttcattgatatagttgccctacgaattgcatcatcgagaacagactctggaattttgctgccaccatgaa |
18702259 |
T |
|
| Q |
132 |
gagcttcagaaattttatcatcaacctctgatacaatttcaatgagttcg |
181 |
Q |
| |
|
||||| ||||| |||||||||||||||||| |||||||||||||||||| |
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|
| T |
18702260 |
aagctttagaaagtttatcatcaacctctgacacaatttcaatgagttcg |
18702309 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 44 - 101
Target Start/End: Complemental strand, 35856531 - 35856474
Alignment:
| Q |
44 |
atgataattggtacaaatttccttgccatagttgccctccgaattgcatcatcaagat |
101 |
Q |
| |
|
|||| ||||||||||||||||||||| || || ||||| ||||||| | ||||||||| |
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|
| T |
35856531 |
atgaaaattggtacaaatttccttgctattgtagccctacgaattgtaccatcaagat |
35856474 |
T |
|
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