View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19803_low_3 (Length: 537)
Name: NF19803_low_3
Description: NF19803
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19803_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 450; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 450; E-Value: 0
Query Start/End: Original strand, 1 - 519
Target Start/End: Complemental strand, 44348051 - 44347547
Alignment:
| Q |
1 |
attaaattgtaccctggaatgtggcatggtttaacatctggtgagcctgatgacaacattgaaaaagtttttgaagacatcatcacgtggcttgacaagc |
100 |
Q |
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| T |
44348051 |
attaaattgtaccctggaatgtggcatggtttaacatctggtgagcctgatgacaacattgaaaaagtttttgaagacatcatcacatggcttgacaagc |
44347952 |
T |
|
| Q |
101 |
acgccaacaatgatgcctatgaatctacacatccaattgagaattgtaaccatgacattgagacattgacaccagttgtatcatcagcaaagactatgaa |
200 |
Q |
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| T |
44347951 |
acgccaacaatgatg---------------atccaattgagaattgtaaccatgacattgagacattgacaccagttgtatcatcagcaaagactatgaa |
44347867 |
T |
|
| Q |
201 |
acaatctcataggcgaaaaagttatctttgtgggttgaaaggaagtcgttcgttacaccactcggcaaattagaatgaaataattacactccggttgtga |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44347866 |
acaatctcataggcgaaaaagttatctttgtgggttgaaaggaagtcgttcgttacaccactcggcaaattagaatgaaataattacactccggttgtga |
44347767 |
T |
|
| Q |
301 |
ctgtgaccgtgaatgtaggtccatgatgtagctat-atattgttttactgtggacatctttcacattctgcctaatttcactgtgttatttactttccaa |
399 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
44347766 |
ctgtgaccgtgaatgtaggtccatgatgtagctataatattgttttactgtggacatctttcacattctgcctaatttcactgtattatttactttccaa |
44347667 |
T |
|
| Q |
400 |
cttgttttttaactccttgcaacaataagtcaatagtagattgttaggcatgtttaagatcttggagacaaaagttatcctataagaacttctctaccaa |
499 |
Q |
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| T |
44347666 |
cttgttttttaactccttgcaacaataagtcaatagtagattgttaggcatgtttaagatcttggagacaaaagttatcctacaagaacttctctaccaa |
44347567 |
T |
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| Q |
500 |
atattttgtgggtaatacgt |
519 |
Q |
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| T |
44347566 |
atattttgtgggtaatacgt |
44347547 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 4 - 53
Target Start/End: Original strand, 39562613 - 39562662
Alignment:
| Q |
4 |
aaattgtaccctggaatgtggcatggtttaacatctggtgagcctgatga |
53 |
Q |
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|||||||||||||||||||||||||| |||||| |||| ||||||||||| |
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| T |
39562613 |
aaattgtaccctggaatgtggcatggcttaacagctggggagcctgatga |
39562662 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 4 - 33
Target Start/End: Complemental strand, 52216360 - 52216331
Alignment:
| Q |
4 |
aaattgtaccctggaatgtggcatggttta |
33 |
Q |
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| T |
52216360 |
aaattgtaccctggaatgtggcatggttta |
52216331 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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