View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19803_low_4 (Length: 465)
Name: NF19803_low_4
Description: NF19803
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19803_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 353; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 51 - 459
Target Start/End: Complemental strand, 39109794 - 39109381
Alignment:
| Q |
51 |
ttagtttgaccatgtaagtattttccttctta-cttacaaagttaaatatgttagtcatttcggtcggtattttcatttgagtctttcaaatcctttgtg |
149 |
Q |
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| T |
39109794 |
ttagtttgaccatgtaagtattttccttcttatcttacaaagttaaatatgttagtcatttcagtcgttattttcatttgagtctttcaaatcctttgtg |
39109695 |
T |
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| Q |
150 |
tcatattcaaatcaaaaagtgacataaatgatcaaagtgtctaacatttaaaatttaagataacagaagggaaacaaaaaattaaagaggtcaaaggggt |
249 |
Q |
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| T |
39109694 |
tcatattcaaaccaaaaagtgacataaatgatcaaagtgtctaacatttaaaatttaagataacaaaatggaaacaaaaaattaaagaggtcaaagggat |
39109595 |
T |
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| Q |
250 |
tgacttttgtatcttagaatggccatattagc----atatattgtggagattattcagtcacaatgtgaatgaagtgacataccatagaaaggaagaagg |
345 |
Q |
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| T |
39109594 |
tgacttttgtaacttagaatggccatattagctagcatatattgtagagattattcagtcacaatgtgaatgaagtgacataccatagaaaggaagaagg |
39109495 |
T |
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| Q |
346 |
tgattgatgatgaaatcttcattgtaacgaagactacgaccagaagcagtgtgatcagcatagacaagttttcgtcttccaaacggagaatcaaactttg |
445 |
Q |
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| T |
39109494 |
tgattgatgatgaaatcttcattgtaacgaagactacgaccagaagcagtgtgatcagcatagacaagttttcgtcttccaaacggagaatcaaactttg |
39109395 |
T |
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| Q |
446 |
catcattacctatg |
459 |
Q |
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| T |
39109394 |
cataattacctatg |
39109381 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 325 - 418
Target Start/End: Complemental strand, 39100589 - 39100496
Alignment:
| Q |
325 |
ataccatagaaaggaagaaggtgattgatgatgaaatcttcattgtaacgaagactacgaccagaagcagtgtgatcagcatagacaagttttc |
418 |
Q |
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| T |
39100589 |
ataccgtagaagggcagaagatgtttggtgatgaagttttcaatgaaatgaagactgcgacctgaagctgtgtgatcagaatagacaagttttc |
39100496 |
T |
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