View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19803_low_6 (Length: 423)
Name: NF19803_low_6
Description: NF19803
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19803_low_6 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 95; Significance: 2e-46; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 265 - 423
Target Start/End: Original strand, 53214124 - 53214281
Alignment:
| Q |
265 |
caacagttaactatcggagtgccggagagcaaatagtgaagtttaaagagcatttttcaaatatttataaaatttatggatcatagcaacttaagnnnnn |
364 |
Q |
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| T |
53214124 |
caacagttaactatcggagtgccggagagcaaataatgaagtataaagagcatttttcaaatatttataaaatttatggatcatagcaacttaag-aaaa |
53214222 |
T |
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| Q |
365 |
nnnntatgaacgggtcttgaaccctttcattgacnnnnnnnngttatgggccctttatt |
423 |
Q |
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| T |
53214223 |
aaaatatgaacgggtcttgaaccctttcattgacaaaaaaaagttatgggccctttatt |
53214281 |
T |
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Target: chr4; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 17 - 83
Target Start/End: Original strand, 53214052 - 53214118
Alignment:
| Q |
17 |
aaaaccactcttcccgcttcctcaaaacacatggaaaagcaactaccattcattaggacattgagca |
83 |
Q |
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| T |
53214052 |
aaaaccactcttcccgcttcctcaaaacacatggaaaagcaactaccattcattaggacattgagca |
53214118 |
T |
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Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 34 - 88
Target Start/End: Complemental strand, 45476710 - 45476656
Alignment:
| Q |
34 |
ttcctcaaaacacatggaaaagcaactaccattcattaggacattgagcaataaa |
88 |
Q |
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| T |
45476710 |
ttcctcaaaatacatggaaaagcaactaccattcactggaatattgagcaataaa |
45476656 |
T |
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