View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19804_high_12 (Length: 306)
Name: NF19804_high_12
Description: NF19804
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19804_high_12 |
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Alignment Details
Target: chr3 (Bit Score: 119; Significance: 8e-61; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 119; E-Value: 8e-61
Query Start/End: Original strand, 19 - 137
Target Start/End: Original strand, 42495228 - 42495346
Alignment:
| Q |
19 |
aattatactaatctttaaataaaattttgggggctgatcaaaaaatgtgttagactttggaatcattttttatcttgaaatataattatgatcatttata |
118 |
Q |
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| T |
42495228 |
aattatactaatctttaaataaaattttgggggctgatcaaaaaatgtgttagactttggaatcattttttatcttgaaatataattatgatcatttata |
42495327 |
T |
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| Q |
119 |
catgtatgtgcctttagaa |
137 |
Q |
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| T |
42495328 |
catgtatgtgcctttagaa |
42495346 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 32 - 229
Target Start/End: Original strand, 42493015 - 42493217
Alignment:
| Q |
32 |
tttaaataaaattttgggggctgatcaaaaaatgtgttagactttggaa-tcatttt-----ttatcttgaaatataattatgatcatttatacatgtat |
125 |
Q |
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| T |
42493015 |
tttaaataaaattttgggggctaat-aaaaaatgcgttagactttggaagtcatttttcatcttttcttgaaatataattataatcatttatacatgtat |
42493113 |
T |
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| Q |
126 |
gtgcctttagaagccatgtttcaggatcaaacacgccttctaaagtccaactcgattttttatcagtccccaagaaattgagtcaagatgttaggtatag |
225 |
Q |
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| T |
42493114 |
gtgcctttagaagccgtctttcaagatgaaacacgccttctcaagtccaacacgtttttttatcagttcctaagaaattgagtcaagatgttaggtatgg |
42493213 |
T |
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| Q |
226 |
atta |
229 |
Q |
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|||| |
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| T |
42493214 |
atta |
42493217 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 227 - 295
Target Start/End: Original strand, 42495341 - 42495409
Alignment:
| Q |
227 |
ttagaatgacctatcattttcacctactttcctaggcttctctaagcattttataaagtgaaccttcat |
295 |
Q |
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| T |
42495341 |
ttagaatgacttatcattttcacctactttcctaggcttctctaagcattttataaagtgaaccttcat |
42495409 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 213 - 261
Target Start/End: Original strand, 42493233 - 42493281
Alignment:
| Q |
213 |
atgttaggtatagattagaatgacctatcattttcacctactttcctag |
261 |
Q |
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| T |
42493233 |
atgttaggtatggattagaatgacctatcattttcacctacttttctag |
42493281 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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