View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19804_high_2 (Length: 489)
Name: NF19804_high_2
Description: NF19804
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19804_high_2 |
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Alignment Details
Target: chr5 (Bit Score: 225; Significance: 1e-124; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 161 - 471
Target Start/End: Complemental strand, 41344155 - 41343849
Alignment:
| Q |
161 |
gtgtggctgcgtggggccgtgagactgtgagctgaaaaagcccacgtagcctctttttcatataa---catcttgttattattgtgaattttgtaagatg |
257 |
Q |
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| T |
41344155 |
gtgtggctgcgtggggccgtgagactgtgagctgaaaaagtccacgtagcctctttttcatataataacatcttgttattgttgtgaattttgtttgatg |
41344056 |
T |
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| Q |
258 |
aaaaagagtttggattttagttgttaattaagtgatactataactatggaagctttagtttcctgttctctgccttctttaactattgccaaagctagga |
357 |
Q |
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| T |
41344055 |
aaaaagagtt-ggattttagttgttaattaagtgatactat------ggaagctttagtttgctgttctctgccttctttaactattaccaaagctagga |
41343963 |
T |
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| Q |
358 |
acatagttacacataattgttgttcctcaacagtgagaaaaacctgtgattttggggttaagaatgctagaacaacaacaaaaagaagaacaaggatagg |
457 |
Q |
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| T |
41343962 |
acatagttacacgtgattgttgttccttaacagtgagaaaaacctgggattttggggttaagaatgcaagaacaacaacaaaaagaagaacaaggatagg |
41343863 |
T |
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| Q |
458 |
tgttgtgtctgtga |
471 |
Q |
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| T |
41343862 |
tgttgtgtctgtga |
41343849 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 3 - 97
Target Start/End: Complemental strand, 41344314 - 41344218
Alignment:
| Q |
3 |
aaattttaaggaggaacacacttctggattccaattcaatnnnnnnnn--tgttaatcaaaatatgaatactttataagagttagaaattattcccc |
97 |
Q |
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|||| ||||||||||||||||||| ||||| ||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
41344314 |
aaatcttaaggaggaacacacttccggatttcaattcaataaaataaaattgttaatcaaaatatgaatactttataagggttagaaattattcccc |
41344218 |
T |
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