View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19804_high_3 (Length: 487)
Name: NF19804_high_3
Description: NF19804
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19804_high_3 |
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Alignment Details
Target: chr6 (Bit Score: 261; Significance: 1e-145; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 147 - 477
Target Start/End: Complemental strand, 3941994 - 3941667
Alignment:
| Q |
147 |
aattcaaaatgcatgttatcttacaaggcaacgaattccaaggcatgtgttatttgagtgaacctcttaacattatataaatagtattcttcaaatacac |
246 |
Q |
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| T |
3941994 |
aattcaaaatacatgttatcttacaaggcaacgaattccaaggcatgtgttatttgagtgaaccttttaacattatataaatagtattcttcaa--acac |
3941897 |
T |
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| Q |
247 |
aacttccatatgactcctattttattaatttctcaaatataataacaacaattgatcttgcagttttatttaatttcctaagtnnnnnnnnncacaagtt |
346 |
Q |
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| T |
3941896 |
aacttccatatgactcctattttattattttctcaaagataataacaacaattgatcttgcagttttatttaatttcctaagtaaaaaaaaacacaag-t |
3941798 |
T |
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| Q |
347 |
tttacagagaaataaggatcactagatgagggaggagatcaactatgacttcatttcctttcaatgtcacccctattccttaagagaaagtaactcattg |
446 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3941797 |
tttacagagaaataaggatcactagatgagggaggagatcgactatgacttcatttcctttcaatgtcacccctattccttaagagaaagtaactcattg |
3941698 |
T |
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| Q |
447 |
aaaaaacacaagttacattttcatcaatatt |
477 |
Q |
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|||||||||||||| |||||||||||||||| |
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| T |
3941697 |
aaaaaacacaagttgcattttcatcaatatt |
3941667 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 104 - 150
Target Start/End: Complemental strand, 3942062 - 3942016
Alignment:
| Q |
104 |
taaaatgaccctttagacaaactgggtctatttggcattccctaatt |
150 |
Q |
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| T |
3942062 |
taaaatgaccctttagataaactgggtctatttggcattccctaatt |
3942016 |
T |
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