View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19804_high_6 (Length: 426)
Name: NF19804_high_6
Description: NF19804
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19804_high_6 |
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Alignment Details
Target: chr1 (Bit Score: 362; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 47 - 416
Target Start/End: Complemental strand, 11087876 - 11087507
Alignment:
| Q |
47 |
aaaatgttagattataatgaacctatttcactgtctttagctcttgatatgactccaattgcacagatggaagtgcatatattttatcactaattctcat |
146 |
Q |
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| T |
11087876 |
aaaatgttagattataatgaacctatttcactgtctttagctcttggtatgactccaattgcacagatggaagtgcatatattttatcactaattctcat |
11087777 |
T |
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| Q |
147 |
ataaatgctagttgggaataacttattacatttgttcttaatatatttatttactatatgtccacagtggaaagagctacgatggcccatggctgttgtt |
246 |
Q |
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| T |
11087776 |
ataaatgctagttgggaataacttattacatttgttcttaatatatttatttactatatgtccacagtggaaagagctacgatggcccatggctgttgtt |
11087677 |
T |
|
| Q |
247 |
tatttccgagagtggtcatggaaagcgggttcctttaagccgtttccgaatgtcgtctttgaatcgagttggtttgattggatacaaggtattttttcct |
346 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11087676 |
tatttctgagagtggtcatggaaagcgggttcctttaagccgtttccgaatgtcgtctttgaatcgagttggtttgattggatacaaggtattttttcct |
11087577 |
T |
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| Q |
347 |
ttcactgccatgatccttttgacaataaactgttcattcaaaaataaatatgttgtctttctcacctatg |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11087576 |
ttcactgccatgatccttttgacaataaactgttcattcaaaaataaatatgttgtctttctcacctatg |
11087507 |
T |
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