View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19804_high_8 (Length: 410)
Name: NF19804_high_8
Description: NF19804
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19804_high_8 |
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Alignment Details
Target: chr2 (Bit Score: 268; Significance: 1e-149; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 86 - 389
Target Start/End: Complemental strand, 2341961 - 2341658
Alignment:
| Q |
86 |
gaaccgacaatcatcatctgaaactcacacatgcaactgcaaggttccgaattcaaatccggatgaatgtgtccaacctagcaaattttgtttctgagag |
185 |
Q |
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|||| |||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
2341961 |
gaactgacaatcatcatctaaaactcacacatgcaacttcaaggttccgaattcaaatccggatgaatgtgtccaacctagcaaattttgtttttgagag |
2341862 |
T |
|
| Q |
186 |
tatcttcaatgttagaaaagaggatgagctcataaaaacgtgtgaaccatgtggttttaacatatatagcatgtaaatagaatccaaagcatacgttaaa |
285 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| ||| ||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2341861 |
tatcttcaatgttagaaaagaggatgagctcataaaaacgtgtgagccacgtgattttaacatatatagcatgtaaatagaatccaaagcatacgttaaa |
2341762 |
T |
|
| Q |
286 |
aaatatggttaattcagttcacaatcaaaattatggttaattcaagtacatatatattgtatagttttgaccaaattttttacgtgaattgaattaacaa |
385 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||| |
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| T |
2341761 |
aaatatggttaattcagttcacaatcaaaattatggttaattcaagtacatatatattgtatagctttgaccaatttttttacgtgaattgaattaacaa |
2341662 |
T |
|
| Q |
386 |
tcta |
389 |
Q |
| |
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|||| |
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|
| T |
2341661 |
tcta |
2341658 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 2342057 - 2341990
Alignment:
| Q |
1 |
aaaatatatgaaacaatttcatacgataagtctt-tgacatctaaatcaaagggtatggtaacataag |
67 |
Q |
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|||| ||||||||||||||||||||||| ||||| ||||||||||||||||||||||| ||||||||| |
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| T |
2342057 |
aaaaaatatgaaacaatttcatacgataggtcttgtgacatctaaatcaaagggtatgataacataag |
2341990 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 290 - 336
Target Start/End: Original strand, 40242887 - 40242933
Alignment:
| Q |
290 |
atggttaattcagttcacaatcaaaattatggttaattcaagtacat |
336 |
Q |
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| T |
40242887 |
atggttaattcaattcacaatcaaaattgtggttaattcaactacat |
40242933 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 290 - 335
Target Start/End: Complemental strand, 31897110 - 31897065
Alignment:
| Q |
290 |
atggttaattcagttcacaatcaaaattatggttaattcaagtaca |
335 |
Q |
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|||||| ||| | |||||||||||||||||||||||||||| |||| |
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| T |
31897110 |
atggttgatttaattcacaatcaaaattatggttaattcaactaca |
31897065 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 284 - 336
Target Start/End: Original strand, 27388845 - 27388897
Alignment:
| Q |
284 |
aaaaatatggttaattcagttcacaatcaaaattatggttaattcaagtacat |
336 |
Q |
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|||||| | ||||||||||||||| ||||||||| |||||||| ||| ||||| |
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| T |
27388845 |
aaaaatgtagttaattcagttcacgatcaaaattgtggttaatccaactacat |
27388897 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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