View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19804_low_10 (Length: 404)
Name: NF19804_low_10
Description: NF19804
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19804_low_10 |
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Alignment Details
Target: chr1 (Bit Score: 359; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 15 - 388
Target Start/End: Original strand, 30275724 - 30276095
Alignment:
| Q |
15 |
atcaaaacacatcagtaatgtttaataatgtatggtaattatgaacacacctgtaatagtgtcagaaccttccggccactagaagttagcagacaataat |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30275724 |
atcaaaacacatcagtaatgtttaataatgtatggtaatt--gaacacacctgtaatagtgtcagaaccttccggccactagaagttagcagacaataat |
30275821 |
T |
|
| Q |
115 |
caggttgttcggttgaagacccagctccgccaaacactccagacacaaggtatttctctaaaatccaagaatcacttattgagaatataggaatcacttt |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30275822 |
caggttgttcggttgaagacccagctccgccaaacactccagacacaaggtatttctctaaaatccaagaatcacttattgagaatataggaatcacttt |
30275921 |
T |
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| Q |
215 |
cttaaagtggtttatgtgtgtattcaaaacctcttcaatgcaaggaaagagttgatttaccaagtatggcagcagcattaatttctgatcttctaacaaa |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30275922 |
cttaaagtggtttatgtgtgtattcaaaacctcttcaatgcaaggaaagagttgatttaccaagtatggcagcagcattaatttctgatcttctaacaaa |
30276021 |
T |
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| Q |
315 |
gaacaatacatgactgcaaacttcgcagcctttatggcagaggacaaaccaacacttacttctgatgtggattt |
388 |
Q |
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| T |
30276022 |
gaacaatacatgactgcaaacttcgcagcctttatggcagaggacaaaccaacacatacttctgatgtggattt |
30276095 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 258; Significance: 1e-143; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 15 - 388
Target Start/End: Original strand, 7779035 - 7779396
Alignment:
| Q |
15 |
atcaaaacacatcagtaatgtttaataatgtatggtaattatgaacacacctgtaatagtgtcagaaccttccggccactagaagttagcagacaataat |
114 |
Q |
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||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||| |
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| T |
7779035 |
atcaaaacacatcagtaatgtttaataatatatggtaatt--gaacacacctgtaatagtgtcagaacgttctggccactagaagttagcagacaataat |
7779132 |
T |
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| Q |
115 |
caggttgttcggttgaagacccagctccgccaaacactccagacacaaggtatttctctaaaatccaagaatcacttattgagaatataggaatcacttt |
214 |
Q |
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|||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
7779133 |
caggttgttcttttgaagatccagctccgccaaacactccagacacaaggtatttctctaaaatccaagaatcacttactgagaatataggaatcacttt |
7779232 |
T |
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| Q |
215 |
cttaaagtggtttatgtgtgtattcaaaacctcttcaatgcaaggaaagagttgatttaccaagtatggcagcagcattaatttctgatcttctaacaaa |
314 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||| || |||||||||||||| ||||||||||||||||||||||||||| | |
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| T |
7779233 |
cttaaagtggtttatgtgtgtattcaaaa-ctcttcaatgcaaggaaagagatgctttaccaagtatggtagcagcattaatttctgatcttctaac--a |
7779329 |
T |
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| Q |
315 |
gaacaatacatgactgcaaacttcgcagcctttatggcagaggacaaaccaacacttacttctgatgtggattt |
388 |
Q |
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||||||| ||||||||||||| ||||||||| ||||||||||||||||||||||||||||| |||| |
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| T |
7779330 |
gaacaatccatgactgcaaac-------aatttatggcataggacaaaccaacacttacttctgatgtgcattt |
7779396 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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