View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19804_low_14 (Length: 305)
Name: NF19804_low_14
Description: NF19804
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19804_low_14 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 138; Significance: 4e-72; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 127 - 271
Target Start/End: Original strand, 24743354 - 24743499
Alignment:
| Q |
127 |
cctaccacaaggcctgtaatggggccacaaagccaaataaatgaagaaaaagcatgtcctattcccaatgtctgcatcaaaaccaaacaaatagagtaac |
226 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24743354 |
cctaccacaaggcctgtaatggggccacaaagccaaataaatgaagaaaaagcatgtcctattcccaatgtctgcatcaaaaccaaacaaatagagtaac |
24743453 |
T |
|
| Q |
227 |
tatatagtaaatcccaaatccaagagt-aacaaccattttagtccc |
271 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
24743454 |
tatatagtaaatcccaaatccaagagtaaacaaccattttagtccc |
24743499 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 24743228 - 24743290
Alignment:
| Q |
1 |
atagaaggcttgaacatattctgatgaagcaatagaaatcatatatgccagaatagtaagtat |
63 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||| |||||| ||||||||||||||||| |
|
|
| T |
24743228 |
atagaaggcttgaccatattctgatgaagcaatagaaaacatataggccagaatagtaagtat |
24743290 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University