View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19804_low_18 (Length: 276)
Name: NF19804_low_18
Description: NF19804
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19804_low_18 |
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Alignment Details
Target: chr5 (Bit Score: 241; Significance: 1e-133; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 17 - 269
Target Start/End: Original strand, 8161472 - 8161724
Alignment:
| Q |
17 |
ttaagaaacactgcaatgagtgaatgcagtttcttgtgcatggtcccgttcaattggagtatagagtgttttcccattaattctctaattgattttggat |
116 |
Q |
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| T |
8161472 |
ttaagaaacactgcaatgagtgaatgcagtttcttgtgcatggtcccgttcaattggagtatagagtgttttcccattaattctctaattgattttggat |
8161571 |
T |
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| Q |
117 |
aagcagggacaaaaatgttcttttgattcagtagaaccaccttgttcacttctgggtccgttgaaattatcacattgcttcccaaaatgtttgtcttaaa |
216 |
Q |
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| T |
8161572 |
aagcagggataaaattgttcttttgattcagtagaaccaccttgttcacttctgggtccgttgaaattatcacattgcttcccaaaatgtttgtcttaaa |
8161671 |
T |
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| Q |
217 |
cacattcccataactgcatttacatatacaaaatgtaaataaaaacacctttg |
269 |
Q |
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| T |
8161672 |
cacattcccataactgcatttacatatacaaaatgtaaataaaaacacgtttg |
8161724 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 34 - 174
Target Start/End: Complemental strand, 32420111 - 32419971
Alignment:
| Q |
34 |
gagtgaatgcagtttcttgtgcatggtcccgttcaattggagtatagagtgttttcccattaattctctaattgattttggataagcagggacaaaaatg |
133 |
Q |
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||||| ||| |||||| | |||||| |||| |||| ||| ||||||||||||| |||||||| |||||||||||||||||||||||| |||| || ||| |
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| T |
32420111 |
gagtgcatgaagtttcctatgcatgttcccattcatttgaagtatagagtgttctcccattagttctctaattgattttggataagctgggatgaagatg |
32420012 |
T |
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| Q |
134 |
ttcttttgattcagtagaaccaccttgttcacttctgggtc |
174 |
Q |
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| T |
32420011 |
ctcccttggttttgtagaatcaccttgttcacatctgggtc |
32419971 |
T |
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