View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19804_low_19 (Length: 275)
Name: NF19804_low_19
Description: NF19804
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19804_low_19 |
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Alignment Details
Target: chr2 (Bit Score: 240; Significance: 1e-133; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 16 - 259
Target Start/End: Original strand, 34219690 - 34219933
Alignment:
| Q |
16 |
atgcagttggaactgatagatgaatgtctaggcgattcgattgctgtagctgaacctgaaatgttgagatgtattcaaataggacttttatgtgttcaag |
115 |
Q |
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| T |
34219690 |
atgcagttggaactgatagatgaatgtctaggcgattcgattgctgtagctgaacctgaaatattgagatgtattcaaataggacttttatgtgttcaag |
34219789 |
T |
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| Q |
116 |
agagatctgatgataggccagacatgtcagcagtagttctaatgctgaatggtgagaaagcattgcctaatccaaaggaaccagcctattatccacgcca |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34219790 |
agagatctgatgataggccagacatgtcagcagtagttctaatgctgaatggtgagaaagcattgcctaatccaaaggaaccagcctattatccacgcca |
34219889 |
T |
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| Q |
216 |
acctggctcttcatcagagaatagtaagctgcattcaaacaatg |
259 |
Q |
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| T |
34219890 |
acctggctcttcatcagagaatagtaagctgcattcaaacaatg |
34219933 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 124; E-Value: 8e-64
Query Start/End: Original strand, 28 - 259
Target Start/End: Original strand, 34208534 - 34208765
Alignment:
| Q |
28 |
ctgatagatgaatgtctaggcgattcgattgctgtagctgaacctgaaatgttgagatgtattcaaataggacttttatgtgttcaagagagatctgatg |
127 |
Q |
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| T |
34208534 |
ctgatagatgaatctctaagcgattcgattgctgtagccgaacctgaaatattgagatgtattcagatagggcttttatgtgtgcaagagagacctgatg |
34208633 |
T |
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| Q |
128 |
ataggccagacatgtcagcagtagttctaatgctgaatggtgagaaagcattgcctaatccaaaggaaccagcctattatccacgccaacctggctcttc |
227 |
Q |
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| T |
34208634 |
acagaccagacatgtcagcagcagttctaatgctgaatggtgaaaaagcattgcctaagccaaaggaaccagccttctttccacaccaattcggctcgtc |
34208733 |
T |
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| Q |
228 |
atcagagaatagtaagctgcattcaaacaatg |
259 |
Q |
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| T |
34208734 |
atcaggaactactaagttgtattcaaacaatg |
34208765 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 21 - 259
Target Start/End: Complemental strand, 34191998 - 34191760
Alignment:
| Q |
21 |
gttggaactgatagatgaatgtctaggcgattcgattgctgtagctgaacctgaaatgttgagatgtattcaaataggacttttatgtgttcaagagaga |
120 |
Q |
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|||||| |||||||| |||| ||| ||||||| | || || ||| ||| ||||||| |||||||||||||| ||||| ||||||||||||||||||| | |
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| T |
34191998 |
gttggagctgatagaagaatcgctacgcgattccactgttggagcagaagctgaaatattgagatgtattcagatagggcttttatgtgttcaagagaaa |
34191899 |
T |
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| Q |
121 |
tctgatgataggccagacatgtcagcagtagttctaatgctgaatggtgagaaagcattgcctaatccaaaggaaccagcctattatccacgccaacctg |
220 |
Q |
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||||||||||||||||||||||||| | ||||||||||||||||||||| |||||||||||||||||||||||||| |||| |||||| || ||| | |
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| T |
34191898 |
gctgatgataggccagacatgtcagctgcagttctaatgctgaatggtgaaaaagcattgcctaatccaaaggaacctgccttttatccgcgtcaatgcg |
34191799 |
T |
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| Q |
221 |
gctcttcatcagagaatagtaagctgcattcaaacaatg |
259 |
Q |
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||||||||| | | |||||| ||||||||||| |||| |
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| T |
34191798 |
actcttcatcgggaactagtaacctgcattcaaataatg |
34191760 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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