View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19804_low_5 (Length: 467)
Name: NF19804_low_5
Description: NF19804
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19804_low_5 |
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| [»] chr3 (3 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 219; Significance: 1e-120; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 225 - 467
Target Start/End: Complemental strand, 42495628 - 42495386
Alignment:
| Q |
225 |
tgataccatatagatttattctttgaggtctccaagtaagaagagcactattgacatcaagtagcctttgatggcagcaaagacaaacaaatatctgacg |
324 |
Q |
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| T |
42495628 |
tgataccatatagatttattcattggggtctccaagtaaaaagagcactattgacatcaagtagcctttgatggcagcaaagacagacaaatttctgacg |
42495529 |
T |
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| Q |
325 |
atgctaagtttggccaccggagaaaaggcatcattacttgaggatagattacatacatcaagtagcctctaactgggtttgtttctgattctatttgatt |
424 |
Q |
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| T |
42495528 |
atgctaagtttggccaccggagaaaaggcatcattacttgaggatagattacatacatcaagtagcctctaactgggtttgtttctgattctatttgatt |
42495429 |
T |
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| Q |
425 |
gcattacaggggggctgaaatgaaggttcactttataaaatgc |
467 |
Q |
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| T |
42495428 |
gcattacagggggcctgaaatgaaggttcactttataaaatgc |
42495386 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 17 - 250
Target Start/End: Complemental strand, 42495864 - 42495632
Alignment:
| Q |
17 |
atagtaaactgagggccaaaactaaagatgaagcgatcannnnnnnaggattgtatatatcttaaagaaatcaaagttgataacaactttgaatatcatt |
116 |
Q |
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| T |
42495864 |
atagtaaactgagggccaaaactaaagatgaagcgatcgtttttttaggattgtatatatcttaaagaaatcaaagttgataacaactttgaatatcatt |
42495765 |
T |
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| Q |
117 |
tccttnnnnnnntaattgaatatcattgtctatgggcctgtttgagaccatggatggagttatgaaacttacagattgtagttaaacatggaacagaacc |
216 |
Q |
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| T |
42495764 |
tccttaaaaaaa-aattgaatatcattgtatatgggcctgtttgagaccatagatggagttatgaaacttacagattgtagttaaacatggaacagaacc |
42495666 |
T |
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| Q |
217 |
aagaattttgataccatatagatttattctttga |
250 |
Q |
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| T |
42495665 |
aagaatcttgataccatatagatttattttttga |
42495632 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 162; E-Value: 3e-86
Query Start/End: Original strand, 65 - 398
Target Start/End: Complemental strand, 42493629 - 42493280
Alignment:
| Q |
65 |
gattgtatatatcttaaagaaatcaaagttgataacaactttgaatatcatttccttnnnnnnntaattgaatatcattgtctatgggcctgtttgagac |
164 |
Q |
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| T |
42493629 |
gattgtttatatcctaaagaaatcaaagttgataacaactttcaatatcatttccttcaaaaaact-ttgaatatcattgtctatgggcatgtttgagac |
42493531 |
T |
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| Q |
165 |
catggatggagttatgaaacttacagattgtagttaaacatggaacagaaccaagaattttga-----------------taccatatagatttattctt |
247 |
Q |
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| T |
42493530 |
catagatggagttatgaaatttacagactgcaattaaacatggaatagaaccaagaacgttgacaccagataaagagcagtaccatttagatttattcat |
42493431 |
T |
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| Q |
248 |
tgaggtctccaagtaagaagagcactattgacatcaagtagcctttgatggcagcaaagacaaacaaatatctgacgatgctaagtttggccaccggaga |
347 |
Q |
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| T |
42493430 |
cgacgtctccaagtaaaaagagcattattgacatcaagtagcctttgatgccagcaaagacaaacaaatttctgacagtgctaagtttggccacaggaga |
42493331 |
T |
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| Q |
348 |
aaaggcatcattacttgaggatagattacatacatcaagtagcctctaact |
398 |
Q |
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| T |
42493330 |
aaaggcttcattacttgaggatagattacatacatcaagtagcctctaact |
42493280 |
T |
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