View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19804_low_6 (Length: 437)
Name: NF19804_low_6
Description: NF19804
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19804_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 167; Significance: 3e-89; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 167; E-Value: 3e-89
Query Start/End: Original strand, 9 - 250
Target Start/End: Original strand, 32421847 - 32422076
Alignment:
| Q |
9 |
tattattttaaagtttatgttatgattaactttttggaattctaactatatggtgttaatggaatggaattccctaccgttaataggaactcgcattcac |
108 |
Q |
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| T |
32421847 |
tattattttaaagtttatgttatgattaactttttggaattctaactatatggtgttaatggaatggaattccctaccgttaatagga------------ |
32421934 |
T |
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| Q |
109 |
ataatcatgttaacttaggacattcaatcttgattgaacagtttagaaaa-aatgtatatttaatttttcattttataatttagaatactaagattgaat |
207 |
Q |
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| T |
32421935 |
-taatcatgttaacttggaacattcaatcttgattgaacaatttagaaaaaaatgtatatttagtttttcattttataatttagaatactaagattgaat |
32422033 |
T |
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| Q |
208 |
ctgaaccatatctattaaagattagatgacacaactacatgaa |
250 |
Q |
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| T |
32422034 |
ctgaaccatatctattaaagattagattacccaactacatgaa |
32422076 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 351 - 416
Target Start/End: Original strand, 32422070 - 32422136
Alignment:
| Q |
351 |
acatgaaactg-tttttggtaagctaatggttttcttggtactttcgcagttttaattttaaaagac |
416 |
Q |
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| T |
32422070 |
acatgaaactggtttttggtaagctaatggttttcttggtactttcgcagttttaattttaaaagac |
32422136 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 133 - 210
Target Start/End: Original strand, 29776981 - 29777057
Alignment:
| Q |
133 |
caatcttgattgaacagtttagaaaaaatgtatatttaatttttcattttataatttagaatactaagattgaatctg |
210 |
Q |
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| T |
29776981 |
caatcttgatcaaacaatttagaaaatatacatattagattttt-attttataatttaaaatactaaggttgaatctg |
29777057 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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