View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19805_high_16 (Length: 259)
Name: NF19805_high_16
Description: NF19805
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19805_high_16 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 243; Significance: 1e-135; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 17 - 259
Target Start/End: Complemental strand, 53564302 - 53564060
Alignment:
| Q |
17 |
ctttagacatttttcttcaaccatctccttcattaagttgtatgcattattccagtgccccttttcacaaaacatcaaaatcaaaatccggtaagtattg |
116 |
Q |
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| T |
53564302 |
ctttagacatttttcttcaaccatctccttcattaagttgtatgcattattccagtgccccttttcacaaaacatcaaaatcaaaatccggtaagtattg |
53564203 |
T |
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| Q |
117 |
acattaggttcaacttcactctcatccatttcctttttcaacttcagaaccatgtcaatagattttgagtcagcaaacattctcatcagtatattataag |
216 |
Q |
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| T |
53564202 |
acattaggttcaacttcactctcatccatttcctttttcaacttcagaaccatgtcaatagattttgagtcagcaaacattctcatcagtatattataag |
53564103 |
T |
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| Q |
217 |
tcagcgtattaggcatgcacttcagttccttcattttagcata |
259 |
Q |
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| T |
53564102 |
tcagcgtattaggcatgcacttcagttccttcattttagcata |
53564060 |
T |
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