View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19805_high_2 (Length: 727)
Name: NF19805_high_2
Description: NF19805
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19805_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 595; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 595; E-Value: 0
Query Start/End: Original strand, 16 - 637
Target Start/End: Complemental strand, 38736298 - 38735676
Alignment:
| Q |
16 |
caagcaacaaaccctgctccaacatcatacaaaaaagctccaacgcgtaacgatagtaaccatgttcgtttgaagcaacaatcatgacagtccaagaaaa |
115 |
Q |
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| T |
38736298 |
caagcaacaaaccctgttccaacatcatacaaaaaagctccaacgcgtaacgatagtaaccatgttcgtttgaagcaacaatcatgacagtccaagaaaa |
38736199 |
T |
|
| Q |
116 |
cacatttctttcagacataccatcaaacaccttacgagcagaatcataatccttgcattttgagtaagcatgaactacatgattcaaaaacaccaagttg |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38736198 |
cacatttctttcagacataccatcaaacaccttacgagcagaatcataatccttgcattttgagtaagcatgaactacatgattcaaaaacaccaagttg |
38736099 |
T |
|
| Q |
216 |
tctctgtcaccaaaaccagattttaaaacatgcccatgaatgcaattcgcttgtttcagagacccgttttgttcgcaggattttaagagatcaatgagtg |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38736098 |
tctctgtcaccaaaaccagattttaaaacatgcccatgaatgcaattcgcttgtttcagagacccgttttgttcgcaggattttaagagatcaatgagtg |
38735999 |
T |
|
| Q |
316 |
gttgaatgttgggttgtttttgttgtgtttctgtggctgtaagtgcaaggggtttggttaatcttcttccatgtgggtcctttgaaggctttgggttttc |
415 |
Q |
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| T |
38735998 |
gttgaatgttgggttgtttttgttgtgtttctgtggctgtaagtgcaaggggtttggttaatcttcttccatgtgggtcctttgaaggctttgggttttc |
38735899 |
T |
|
| Q |
416 |
ggacataaaatgaatagggataaggtagtggtttgtacgatgatgaattgtgcttactttgtttgtggaagcatgagggagattacaaggttggtgcacc |
515 |
Q |
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| T |
38735898 |
agacataaaatgaatagggataaggtagtggtttgtacgatgatgaattgtgcttactttgtttgtggaagcatgagggagattacaaggttggtgcacc |
38735799 |
T |
|
| Q |
516 |
atgtgtgaaaccatgttctgtgttagaatgtctatttctctcttggtcttatcttacccgttcagcttttgcaatgcttctgaaaattcaagatagaaga |
615 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||| |||| |
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| T |
38735798 |
atgtgtgaaaccatgttctgtgttagaatgtctatttctctcttggtcttatcttacccgttctgcttttgcaatgattctgaaaattcaagatataaga |
38735699 |
T |
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| Q |
616 |
ttta-aaaatgtttttatattta |
637 |
Q |
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| T |
38735698 |
tttaaaaaatgtttttatattta |
38735676 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 103 - 155
Target Start/End: Complemental strand, 42761205 - 42761153
Alignment:
| Q |
103 |
cagtccaagaaaacacatttctttcagacataccatcaaacaccttacgagca |
155 |
Q |
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| T |
42761205 |
cagtccaagaaaccacatttctgtcagacaattcatcaaacaccttacgagca |
42761153 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 653 - 700
Target Start/End: Original strand, 17661865 - 17661914
Alignment:
| Q |
653 |
atttaatccttgcaatttggg--cgtttaaaaattggtcctgtattcgct |
700 |
Q |
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| T |
17661865 |
atttcatccttgcaattaggggtcgtttaaaaattggtcctgtattcgct |
17661914 |
T |
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