View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19805_high_8 (Length: 390)
Name: NF19805_high_8
Description: NF19805
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19805_high_8 |
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Alignment Details
Target: chr4 (Bit Score: 155; Significance: 3e-82; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 1 - 163
Target Start/End: Original strand, 34013051 - 34013213
Alignment:
| Q |
1 |
aagaaacttttagattaaaaaagttatcacaacaatcaaaagaataaagggaacaatcatcttttaagaattgatggtccaaattcaagttaaacccttt |
100 |
Q |
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| T |
34013051 |
aagaaacttttagattaaaaaagttatcacaacaatcaaaagaataaagggaacaatcatcttttcagaattgatggtccaaattcaagttcaacccttt |
34013150 |
T |
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| Q |
101 |
tttagattacaacaaagtacagatctttacaatcaacaacaattctgagaatcaaaacagaac |
163 |
Q |
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| T |
34013151 |
tttagattacaacaaagtacagatctttacaatcaacaacaattctgagaatcaaaacagaac |
34013213 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 253 - 386
Target Start/End: Original strand, 34013307 - 34013440
Alignment:
| Q |
253 |
ggaggggtaccccagtattgggaccactgcctttctcaccagtacatagagctctgaaattttcagcagttttgggaacaacatcgttgtaaagttcgac |
352 |
Q |
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| T |
34013307 |
ggaggggtaccccagtattgggaccactgcctttctcaccagtacatagagctctgaaattttcagcagttttgggaacaacatcgttgtaaagttcgac |
34013406 |
T |
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| Q |
353 |
caatattcgtccttctagttcttcacctatgcta |
386 |
Q |
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| T |
34013407 |
caatattcgtccttctagttcttcacctatgcta |
34013440 |
T |
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