View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19805_low_1 (Length: 791)

Name: NF19805_low_1
Description: NF19805
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19805_low_1
NF19805_low_1
[»] chr4 (1 HSPs)
chr4 (1-781)||(30715281-30716061)


Alignment Details
Target: chr4 (Bit Score: 741; Significance: 0; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 741; E-Value: 0
Query Start/End: Original strand, 1 - 781
Target Start/End: Complemental strand, 30716061 - 30715281
Alignment:
Q  1 caatgcatcgttcaaagatgtgggtttctgcatgagaacccaatcatgaaactcttccctcaatccattcacaaatacccctttgataacatcgtcttcc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30716061 caatgcatcgttcaaagatgtgggtttctgcatgagaacccaatcatgaaactcttccctcaatccattcacaaatacccctttgataacatcgtcttcc 30715962  T
Q  101 aacccatattctggccaccgcttcaaaatccattgcagcctcagaaagtaggatcttacacgttccttctcaccttgatgaatccccataagttctgacc 200  Q
    ||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30715961 aacccatgttccggccaccgcttcaaaatccattgcagcctcagaaagtaggatcttacacgttccttctcaccttgatgaatccccataagttctgacc 30715862  T
Q  201 ttaactcctcaacgggttcaatttcgtaataggcttgtaaaaacgacaacttgatttcatcccatgaaagagaaatgtaataaggctcgatgttgaggtc 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30715861 ttaactcctcaacgggttcaatttcgtaataggcttgtaaaaacgacaacttgatttcatcccatgaaagagaaatgtaataaggctcgatgttgaggtc 30715762  T
Q  301 gtaccatagtgcagattcttcttcaagtgtgacagggaagatcttcttttgcatttcaacggaggatgcattgtttgctctacatactttgttgaaacga 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30715761 gtaccatagtgcagattcttcttcaagtgtgacagggaagatcttcttttgcatttcaacggaggatgcattgtttgctctacatactttgttgaaacga 30715662  T
Q  401 ctcaaatgggttattggggattcgtttggagtgccatgaaaaattggtaaaggagcgattggtatgtatgaagatgcattcatgggttgtgtgggatttg 500  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||     
T  30715661 ctcaaatgggttattggggattcgtttggagtgccacgaaaaattggtaaaggagcgatttgtatgtatgaagatgcattcatgggttgtgtgggatttc 30715562  T
Q  501 ggacattataagaagaaactgaagggctttctggaacattgccaatgtgtgcttcttgtgagaaagatggtttaccatgtggtgcattggacaaggattc 600  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30715561 ggacattataagaagaaactgaagggctttctggaacattgccaatgtgtgcttcttgtgagaaagatggtttaccatgtggtgcattggacaaggattc 30715462  T
Q  601 agaaacatcatcgtcatcgtcatcattgtcttcttcctctttttcggtttcatcttcaaattgtcggtgttgatcctcttgagatttagaatccacatcg 700  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||    
T  30715461 agaaacatcatcgtcatcgtcatcattgtcttcttcctcttcttcggtttcatcttcaaactgtcggtgttgatcctcttgagattcagaatccacatcg 30715362  T
Q  701 tttgcatcagtactattattatcgttgtcctcgtctttgtattcttctgataacttttgttttggaattctatgatgatgt 781  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  30715361 tctgcatcagtactattattatcgttgtcctcgtctttgtattcttctgataacttttgttttggaattctattatgatgt 30715281  T

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