View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19805_low_10 (Length: 388)
Name: NF19805_low_10
Description: NF19805
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19805_low_10 |
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Alignment Details
Target: chr6 (Bit Score: 283; Significance: 1e-158; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 4 - 372
Target Start/End: Original strand, 34873623 - 34873991
Alignment:
| Q |
4 |
catttataaatcagttgaggaaagaaacatcatagattgcaacacttaactgttgttttcattttgcaggaaatgatgaaaagcaaccatcgcaacaaat |
103 |
Q |
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| T |
34873623 |
catttatatatcagttgaggaaagaaacatcatagattgcaagacttaactggtgttttcattttgcaggaaatgatgaaaagcaaccatcgcaacaaac |
34873722 |
T |
|
| Q |
104 |
tcttgagatgccttaagggtgcttgctagttctggtgaagtgaaggaaatggacttaacggtaacagttgatgagaaaagaggattgtgcagtggtcctt |
203 |
Q |
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| T |
34873723 |
tcttgagatgccttaagggtgcttgcaggttctggtgaagtgaaggaaatggacttaacggtaacggttgatgagaaaagaggattgtgcagtggtcctt |
34873822 |
T |
|
| Q |
204 |
catgggttgtttggtattttagaagaggatatgagnnnnnnngacatagttcttgaagcttgttcgtgtacattgttgaatgatgatgnnnnnnngttga |
303 |
Q |
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| T |
34873823 |
catgggttgtttggtattcgggaagagggtatgagtttttttgacatagttcttgaagcttgttcgtgtacattgttgaatgatgatgtttttttgttga |
34873922 |
T |
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| Q |
304 |
aattgttagtttatggttttaggttttgtgttgaagtagtggcgacctcttttaaggacaggttggtga |
372 |
Q |
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| T |
34873923 |
aattgttagtttatggttttaggttttgtgttgaagtagtggcgacctcttttaaggacaggttggtga |
34873991 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 4 - 323
Target Start/End: Complemental strand, 34872001 - 34871678
Alignment:
| Q |
4 |
catttataaatcagttgaggaaagaaacatcatagattgcaacacttaactgttgttttcattttgcaggaaatgatgaaaagcaaccatcgcaacaaat |
103 |
Q |
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| T |
34872001 |
catttataaatcagttgaggaaagaaacatcatggattgcaagacttaactgttgttttcattttgcaggaaatgatgaaaagcaaccatcgcagcaaac |
34871902 |
T |
|
| Q |
104 |
tcttgagatgccttaagggtgcttgctagttctggtgaagtgaaggaaatggacttaacggtaacagttgatgagaaaagaggattgtgcagtggtcctt |
203 |
Q |
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||||||||||||||||||||||||||| ||| |||||||||||||||||| |||||||||||||| |||||||| ||||||||||||||||||||||||| |
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| T |
34871901 |
tcttgagatgccttaagggtgcttgctggttttggtgaagtgaaggaaatagacttaacggtaacggttgatgaaaaaagaggattgtgcagtggtcctt |
34871802 |
T |
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| Q |
204 |
catgggttgtttggtattttagaagaggatatgagnnnnnnngacatagttcttgaagc--ttgttcgtgtacattgttgaatgatgatg--nnnnnnng |
299 |
Q |
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| T |
34871801 |
catgggttgtttggtatttgggaagtgggtaagagtttttttgacatagttcttgaagcttttgttcttgtacattgttgaatgatgatgtttttttttg |
34871702 |
T |
|
| Q |
300 |
ttgaaattgttagtttatggtttt |
323 |
Q |
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| T |
34871701 |
ttgaaattgttagtttatggtttt |
34871678 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 74 - 285
Target Start/End: Complemental strand, 9911247 - 9911036
Alignment:
| Q |
74 |
aaatgatgaaaagcaaccatcgcaacaaattcttgagatgccttaagggtgcttgctagttctggtgaagtgaaggaaatggacttaacggtaacagttg |
173 |
Q |
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|||||||||||||||||||| ||| || | |||||||| ||||| ||||| |||| |||| || |||| |||||||||||| ||||| ||||| |||| |
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| T |
9911247 |
aaatgatgaaaagcaaccatggcagcagaatcttgagacagcttaatggtgcgtgctggttcaggagaagagaaggaaatggagttaacagtaacggttg |
9911148 |
T |
|
| Q |
174 |
atgagaaaagaggattgtgcagtggtccttcatgggttgtttggtattttagaagaggatatgagnnnnnnngacatagttcttgaagcttgttcgtgta |
273 |
Q |
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| T |
9911147 |
ttgagaaacgagaattgtgtggtggtccttcacgggttgtttggtattcgggaagagggtatgaatttttttgacatagttcttgaagcttggtcttgta |
9911048 |
T |
|
| Q |
274 |
cattgttgaatg |
285 |
Q |
| |
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|||||||||||| |
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| T |
9911047 |
cattgttgaatg |
9911036 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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