View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19805_low_11 (Length: 377)
Name: NF19805_low_11
Description: NF19805
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19805_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 338; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 1 - 359
Target Start/End: Original strand, 35696787 - 35697145
Alignment:
| Q |
1 |
acgaagcctaacaaacagaatcaaaactatgacaataacagtaattgtgatgccaagcatatgatgacgcttcaacgatcacaaagcgnnnnnnntgatt |
100 |
Q |
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| T |
35696787 |
acgaagcctaacaaacagaatcaaaactatgacaataacagtaattgtgatgccaagcatatgatgacgcttcaacgatcacaaagcgaaaaaaatgatt |
35696886 |
T |
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| Q |
101 |
cgacgattaatgattatgtttataatcctaatggaaaaaacggttacggtggtgaatgtgagtctgaaattagtgttcctactgggaagaaaggtgtgat |
200 |
Q |
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| T |
35696887 |
cgacgattaatgattatgtttataatcctaatggaaaaaacggttacggtggtgaatgtgagtctgaaattagtgttcctactgggaagaaaggtgtgat |
35696986 |
T |
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| Q |
201 |
cgtgaacgcgaatggatcgttgtgttcggatgttggaccttcaccgtctgtggtggctgccgcgatagcgaaaggattgtatccgttgccattgcacgtg |
300 |
Q |
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| T |
35696987 |
cgtgaacgcgaatggatcgttgtgttcggatgttggaccttcaccgtctgtggtggctgccgcgatagcgaaaggattgtatccgttgccattgcacgtg |
35697086 |
T |
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| Q |
301 |
ccaagaaagacggtgaataattcaatgtttgagaaatggccgccggagaaggacaatgg |
359 |
Q |
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| T |
35697087 |
ccaagaaagacggtgaataattcaatgtttgagaaatggccgccggagaaggacaatgg |
35697145 |
T |
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