View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19805_low_13 (Length: 318)
Name: NF19805_low_13
Description: NF19805
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19805_low_13 |
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Alignment Details
Target: chr3 (Bit Score: 261; Significance: 1e-145; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 11 - 302
Target Start/End: Original strand, 51115040 - 51115328
Alignment:
| Q |
11 |
aattaggtggttgttctctgtatcaatatttcaaatacaatggatggcttacaaaactatgactcaggaagattttggtgtatattttgttgtttctatt |
110 |
Q |
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| T |
51115040 |
aattaggtggttgttctctgtttcaatatttcaaatacaatggatggcttacaaaactatgactcaggaagatttaggtgtacattttgttgtttctatt |
51115139 |
T |
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| Q |
111 |
tagtttttgatcaactttcgttgttgcttaatgattctgtttgtggtgacttgattattgaatacacaagtctctcatgtatgctattttttgcgacact |
210 |
Q |
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| T |
51115140 |
tagtttttgatcaactttcgttgttgcttaatgattctgtttgt-gtgacttgattattgaat--acaagtctctcatgtatgctattttttgcgacact |
51115236 |
T |
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| Q |
211 |
ttcacctcacctccttagtatttatgtaaattatgctaggtatttgtttaatcattaaacaatctgttattgtgtgcattttggtttagcct |
302 |
Q |
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| T |
51115237 |
ttcacctcacctccttagtatttatgtaaattatgctaggtatttgtttaatcattaaacaatctgttattgtgtgcattttggtttagcct |
51115328 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 18 - 91
Target Start/End: Original strand, 1119125 - 1119198
Alignment:
| Q |
18 |
tggttgttctctgtatcaatatttcaaatacaatggatggcttacaaaactatgactcaggaagattttggtgt |
91 |
Q |
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| T |
1119125 |
tggttgttctctgtttcagtatttcagttacaatgtacggcttacaaaactacgactcaggaagattttggtgt |
1119198 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 54 - 108
Target Start/End: Complemental strand, 29020718 - 29020664
Alignment:
| Q |
54 |
atggcttacaaaactatgactcaggaagattttggtgtatattttgttgtttcta |
108 |
Q |
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| T |
29020718 |
atggtttacagaactatgactcaggaagattttggtgtattttgtgttgtctcta |
29020664 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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