View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19805_low_16 (Length: 289)
Name: NF19805_low_16
Description: NF19805
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19805_low_16 |
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Alignment Details
Target: chr8 (Bit Score: 244; Significance: 1e-135; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 9 - 272
Target Start/End: Original strand, 10274073 - 10274336
Alignment:
| Q |
9 |
agcagagattggttttccggtgagaataggagaaacatcaccatcaacaattctattgatataaggttccaaatctttgtaagtgaccaatggaacacat |
108 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
10274073 |
agcagtgattggttttccggtgagaataggagaaacatcaccatcaacaattctattaatataaggttccaaatctttgtaagtgaccaatggaacacat |
10274172 |
T |
|
| Q |
109 |
gccttgaagctttcaggatcagttcttccattcagtcctaaactctgcaagtattcagctgatgcattttcttccaaaatcctcttcagtgtttcctttt |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| | |
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| T |
10274173 |
gccttgaagctttcaggatcagttcttccattcagtcctaaactctgcaagtattcagctgatgcattttcttccaaaatcctcttcagtgtctccttct |
10274272 |
T |
|
| Q |
209 |
gaacattcccagcatcctttgttagcctctcaaattcttctatcaccttttccatgtcaaattt |
272 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10274273 |
gaacattctcagcatcctttgttagcctctcaaattcttctatcaccttttccatgtcaaattt |
10274336 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 9 - 272
Target Start/End: Original strand, 10244347 - 10244610
Alignment:
| Q |
9 |
agcagagattggttttccggtgagaataggagaaacatcaccatcaacaattctattgatataaggttccaaatctttgtaagtgaccaatggaacacat |
108 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
10244347 |
agcagtgattggttttccggtgagaataggagaaacatcaccatcaacaattctattaatataaggttccaaatctttgtaagtgaccaatggaacacat |
10244446 |
T |
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| Q |
109 |
gccttgaagctttcaggatcagttcttccattcagtcctaaactctgcaagtattcagctgatgcattttcttccaaaatcctcttcagtgtttcctttt |
208 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||| | |
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| T |
10244447 |
gccttgaagctttcaggatcagttcttccattcagtcctaaactctgcaagtattcagctgatgcatttacttccaaaatcctcttcagtgtatccttct |
10244546 |
T |
|
| Q |
209 |
gaacattcccagcatcctttgttagcctctcaaattcttctatcaccttttccatgtcaaattt |
272 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
10244547 |
gaacattctcagcatcctttgttagcctctcaaattcttctatcaagttttccatgtcaaattt |
10244610 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 15 - 269
Target Start/End: Original strand, 10266322 - 10266576
Alignment:
| Q |
15 |
gattggttttccggtgagaataggagaaacatcaccatcaacaattctattgatataaggttccaaatctttgtaagtgaccaatggaacacatgccttg |
114 |
Q |
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|||||||||||| |||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10266322 |
gattggttttccagtgagaataggagaaaaatcaccatcaactattctattgatataaggttccaaatctttgtaagtgaccaatggaacacatgccttg |
10266421 |
T |
|
| Q |
115 |
aagctttcaggatcagttcttccattcagtcctaaactctgcaagtattcagctgatgcattttcttccaaaatcctcttcagtgtttccttttgaacat |
214 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||| |
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| T |
10266422 |
aagctttcaggatcagttcttccattcagtcctaaactctgcaagtattcagctgatgcatttccttccaaaatcctcttcagtgtttccttctgaacat |
10266521 |
T |
|
| Q |
215 |
tcccagcatcctttgttagcctctcaaattcttctatcaccttttccatgtcaaa |
269 |
Q |
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|| ||||||||| |||||| |||||||||||||||||||||||||||| |||||| |
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| T |
10266522 |
tctcagcatcctgtgttagactctcaaattcttctatcaccttttccaagtcaaa |
10266576 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 15 - 267
Target Start/End: Original strand, 10285884 - 10286136
Alignment:
| Q |
15 |
gattggttttccggtgagaataggagaaacatcaccatcaacaattctattgatataaggttccaaatctttgtaagtgaccaatggaacacatgccttg |
114 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||| ||||||||||||||| |||||||||||||||| ||||| |
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| T |
10285884 |
gattggttttccggtgagaataggagaaacatcaccatcaaccattctatcgatataagtctccaaatctttgtaaatgaccaatggaacacaacccttg |
10285983 |
T |
|
| Q |
115 |
aagctttcaggatcagttcttccattcagtcctaaactctgcaagtattcagctgatgcattttcttccaaaatcctcttcagtgtttccttttgaacat |
214 |
Q |
| |
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|| |||||| |||||||||| |||||||| |||||||| ||||| ||||||| |||||||||||||||||||||| | |||| ||||||||||||||||| |
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| T |
10285984 |
aaactttcaagatcagttctaccattcagccctaaactttgcaaatattcagatgatgcattttcttccaaaatctttttcaatgtttccttttgaacat |
10286083 |
T |
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| Q |
215 |
tcccagcatcctttgttagcctctcaaattcttctatcaccttttccatgtca |
267 |
Q |
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| T |
10286084 |
tttcagcatcctttgttagcctctcaaattcttctaccaccttttccaagtca |
10286136 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 31 - 188
Target Start/End: Original strand, 13980450 - 13980607
Alignment:
| Q |
31 |
agaataggagaaacatcaccatcaacaattctattgatataaggttccaaatctttgtaagtgaccaatggaacacatgccttgaagctttcaggatcag |
130 |
Q |
| |
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|||||||||||| |||||||||||| |||||||||||||||||||||| ||||||||| || || | |||||||||||||||||| ||||| ||||||| |
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| T |
13980450 |
agaataggagaagcatcaccatcaataattctattgatataaggttccgaatctttgtgtgtaacaagtggaacacatgccttgaaactttcgggatcag |
13980549 |
T |
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| Q |
131 |
ttcttccattcagtcctaaactctgcaagtattcagctgatgcattttcttccaaaat |
188 |
Q |
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|| ||||||| || |||||| |||| || |||| ||||||||||| ||||||||||| |
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| T |
13980550 |
tttttccattaagacctaaattctgtaaatattgcgctgatgcattgtcttccaaaat |
13980607 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 19 - 204
Target Start/End: Complemental strand, 48366663 - 48366478
Alignment:
| Q |
19 |
ggttttccggtgagaataggagaaacatcaccatcaacaattctattgatataaggttccaaatctttgtaagtgaccaatggaacacatgccttgaagc |
118 |
Q |
| |
|
|||||||| ||||||||||||||| |||||||||||| ||||||||||||| |||||||||| ||||||| ||| | | ||||| ||| | |||||| | |
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| T |
48366663 |
ggttttccagtgagaataggagaatcatcaccatcaagaattctattgataaaaggttccaagtctttgtgagtagctagtggaatacaagacttgaaac |
48366564 |
T |
|
| Q |
119 |
tttcaggatcagttcttccattcagtcctaaactctgcaagtattcagctgatgcattttcttccaaaatcctcttcagtgtttcc |
204 |
Q |
| |
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| ||| ||||||||||||||| || || ||| ||||||| ||||||||||||||||| |||||||||| || || ||||||||| |
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| T |
48366563 |
tctcaagatcagttcttccatcaagaccaaaattctgcaaatattcagctgatgcattaacttccaaaattcttttgagtgtttcc |
48366478 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 28 - 201
Target Start/End: Original strand, 18046506 - 18046678
Alignment:
| Q |
28 |
gtgagaataggagaaacatcaccatcaacaattctattgatataaggttccaaatctttgtaagtgaccaatggaacacatgccttgaagctttcaggat |
127 |
Q |
| |
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||||||| || |||| |||||||||||| |||||| |||||| |||||||||||||||| || || | |||||||||| |||||| || ||||||| |
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| T |
18046506 |
gtgagaaaagaagaagcatcaccatcaataattctgttgatact-ggttccaaatctttgtgtgtaacaagtggaacacataacttgaaactctcaggat |
18046604 |
T |
|
| Q |
128 |
cagttcttccattcagtcctaaactctgcaagtattcagctgatgcattttcttccaaaatcctcttcagtgtt |
201 |
Q |
| |
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||||||||||||| || || ||| | ||||| ||||| ||| ||||||| || |||||||| | ||||||||| |
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|
| T |
18046605 |
cagttcttccattaagacccaaattttgcaaatattctgctaatgcattatcctccaaaattcgtttcagtgtt |
18046678 |
T |
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