View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19805_low_18 (Length: 262)
Name: NF19805_low_18
Description: NF19805
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19805_low_18 |
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Alignment Details
Target: chr1 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 247
Target Start/End: Complemental strand, 27684249 - 27684003
Alignment:
| Q |
1 |
atgcaacatttccactaagacctatgtgggtttatggttcaatttgggatgcttcatcatgggcaacagaagatggaaaatacaaagctgattacaaata |
100 |
Q |
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|||||||||||||||||||||| |||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
27684249 |
atgcaacatttccactaagaccaatgtgggtttatgggtctatttgggatgcttcatcatgggcaacagaagatggaaaatacaaagctgattacaagta |
27684150 |
T |
|
| Q |
101 |
ccaaccttttgttgcaaagtacacaaacttcaaggctagtggttgcacagcctatgcatcgcattggtgtcgtccggccacggcctcgccgtatcggtcg |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||| |
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| T |
27684149 |
ccaaccttttgttgcaaagtacacaaacttcaaggctagtggttgcacagcctatgcgtcgcgttggtgtcgtccggccacggcctcgccgtatcggtcc |
27684050 |
T |
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| Q |
201 |
ggagggttgacaagacaacaacattggtctatgagttgggttcaaag |
247 |
Q |
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| T |
27684049 |
ggtgggttgacaagacaacaacattggtctatgagttgggttcaaag |
27684003 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 107; Significance: 1e-53; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 4 - 158
Target Start/End: Original strand, 41270266 - 41270420
Alignment:
| Q |
4 |
caacatttccactaagacctatgtgggtttatggttcaatttgggatgcttcatcatgggcaacagaagatggaaaatacaaagctgattacaaatacca |
103 |
Q |
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|||||||||| | ||||| |||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
41270266 |
caacatttcctattagaccaatgtggctttatggttcaatatgggatgcttcatcatgggcaacagaagatggaaaatacaaagctgattacagatacca |
41270365 |
T |
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| Q |
104 |
accttttgttgcaaagtacacaaacttcaaggctagtggttgcacagcctatgca |
158 |
Q |
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| T |
41270366 |
accatttgttgcaaaatatacaaatttcaaagctagtggttgcacagcctatgca |
41270420 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 33 - 133
Target Start/End: Complemental strand, 21083834 - 21083734
Alignment:
| Q |
33 |
tatggttcaatttgggatgcttcatcatgggcaacagaagatggaaaatacaaagctgattacaaataccaaccttttgttgcaaagtacacaaacttca |
132 |
Q |
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||||| |||||||||||||| || || ||||||||||||||||||||||| ||||||||||| ||||||||||| ||||||| || |||||| ||||||| |
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| T |
21083834 |
tatggatcaatttgggatgcatcttcttgggcaacagaagatggaaaatataaagctgattataaataccaaccctttgttggaaggtacactaacttca |
21083735 |
T |
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| Q |
133 |
a |
133 |
Q |
| |
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| |
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| T |
21083734 |
a |
21083734 |
T |
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