View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19805_low_21 (Length: 252)
Name: NF19805_low_21
Description: NF19805
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19805_low_21 |
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Alignment Details
Target: chr5 (Bit Score: 198; Significance: 1e-108; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 8 - 237
Target Start/End: Complemental strand, 11491310 - 11491081
Alignment:
| Q |
8 |
atattattctatcccctccagaaacaacctatacatcacaaattatagattgaatgtgaaatattcaaattcaattaaataataaagaaattaggtaact |
107 |
Q |
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| T |
11491310 |
atatttttctatcccctccagaaacaacctatacatcacaaattatagattgaatgtgaaatattcaaattcaattaaataataaagaaattaggtaact |
11491211 |
T |
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| Q |
108 |
atatcttggtatgtacccaaaacaaagcaaatacttgcattgannnnnnnnccttctctatgcaaccttgaaagattaatttgtaacatttttgtttttc |
207 |
Q |
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| T |
11491210 |
atatcttggtatgtacccaaaacaatgcaaatacttgcattgattttttttccttctctatgcaaccttgaaagattaatttgtaacatttttgtttttc |
11491111 |
T |
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| Q |
208 |
tagaactgaattatttcttatatacatcat |
237 |
Q |
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| T |
11491110 |
tagaactgaattatttcttatatacatcat |
11491081 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 51 - 91
Target Start/End: Complemental strand, 38166548 - 38166508
Alignment:
| Q |
51 |
tatagattgaatgtgaaatattcaaattcaattaaataata |
91 |
Q |
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| T |
38166548 |
tatagaatgaatgtgaaatattcaaattcaactaaataata |
38166508 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 51 - 91
Target Start/End: Original strand, 38173332 - 38173372
Alignment:
| Q |
51 |
tatagattgaatgtgaaatattcaaattcaattaaataata |
91 |
Q |
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| T |
38173332 |
tatagaatgaatgtgaaatattcaaattcaactaaataata |
38173372 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 51 - 91
Target Start/End: Original strand, 38200556 - 38200596
Alignment:
| Q |
51 |
tatagattgaatgtgaaatattcaaattcaattaaataata |
91 |
Q |
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| T |
38200556 |
tatagaatgaatgtgaaatattcaaattcaactaaataata |
38200596 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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