View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19805_low_22 (Length: 250)
Name: NF19805_low_22
Description: NF19805
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19805_low_22 |
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| [»] chr3 (1 HSPs) |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 196; Significance: 1e-107; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 6 - 250
Target Start/End: Original strand, 55169000 - 55169243
Alignment:
| Q |
6 |
agtagcaaaggattaatacgaccctatataaaaatctaagtgactagtttggatataannnnnnnatccaagactagttgcaaggaaattacgaaagatc |
105 |
Q |
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| T |
55169000 |
agtaacaaaggattaatgcgaccctatataaaaatctaagtgactagtttggatataatttttttatataagactagttgcaaggaaattacgaaagatc |
55169099 |
T |
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| Q |
106 |
aaattggggtaaagtctaaaaatactcaagaacgatagtgtagcttacttgttaccgaggagagtgtggagttttatgatgagttgatcttcttgttggg |
205 |
Q |
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| T |
55169100 |
aaattggg-taaagtctaaaaatactcaagaacgatagtgtagcttacttgttaccgaggagagtgtggagttttatgatgagttgatcttcttgttggg |
55169198 |
T |
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| Q |
206 |
tgaaatttccacgtttgaggtcggggcggaggtagttgatccacc |
250 |
Q |
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| T |
55169199 |
tgaaatttccacgtttgaggtcggggcgtaggtagttgatccacc |
55169243 |
T |
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Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 149 - 250
Target Start/End: Complemental strand, 27808307 - 27808206
Alignment:
| Q |
149 |
cttacttgttaccgaggagagtgtggagttttatgatgagttgatcttcttgttgggtgaaatttccacgtttgaggtcggggcggaggtagttgatcca |
248 |
Q |
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||||||||||||| || ||| | |||||||| |||||||||| |||||||| || || || || |||||||| ||||| || | ||| ||||| ||||| |
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| T |
27808307 |
cttacttgttaccaagaagactatggagtttgatgatgagttcatcttcttcttctgtaaagttaccacgtttaaggtctggcctgagatagttaatcca |
27808208 |
T |
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| Q |
249 |
cc |
250 |
Q |
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| T |
27808207 |
cc |
27808206 |
T |
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