View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19805_low_24 (Length: 246)
Name: NF19805_low_24
Description: NF19805
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19805_low_24 |
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Alignment Details
Target: chr2 (Bit Score: 167; Significance: 1e-89; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 10 - 234
Target Start/End: Complemental strand, 16223116 - 16222890
Alignment:
| Q |
10 |
gcataggttatagaaatcacaattatattctaaaagtttagcacctcttccaaagtcttgacacacccgtttacaacgtacctctttatcagcacaatta |
109 |
Q |
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| T |
16223116 |
gcataggttatagaagtcacaattatattctaaaagtttagcacctcttccaaagtcttgacacacccgtttacaatgtacctctttatcagcacaatta |
16223017 |
T |
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| Q |
110 |
gccacgacgtttgtgcaaacaccttcaacttgtattaattgcactgtgtttggagaaagtaag--nnnnnnntgaagcataaattagtgagagatttatc |
207 |
Q |
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| T |
16223016 |
gccacaacgtttgtgcaaacaccttcaacatgtattaattgcactgtgcttggacaaagtaaggaaaaaaaatgaagcataaattagtgagagatttatc |
16222917 |
T |
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| Q |
208 |
atttaaacaaccatgatgaaaatggtg |
234 |
Q |
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| T |
16222916 |
atttaaacaatcatgatgaaaatggtg |
16222890 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 45 - 234
Target Start/End: Complemental strand, 16207275 - 16207087
Alignment:
| Q |
45 |
gtttagcacctcttccaaagtcttgacacacccgtttacaacgtacctctttatcagcacaattagccacgacgtttgtgcaaacaccttcaacttgtat |
144 |
Q |
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| T |
16207275 |
gtttagcaccttttccaaagtcttgacacacctgtggacaatgtacctctttatcaacacaattagccacaacgtttgtgcaaacaccttcaacttgtat |
16207176 |
T |
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| Q |
145 |
taattgcactgtgtttggagaaagtaagnnnnnnntgaagcataaattagtgagagatttatcatttaaacaaccatgatgaaaatggtg |
234 |
Q |
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| T |
16207175 |
taattgcactgttctcagacaaagtaaagaaaaaaataagcataaattagtgagagatttatcatttaaacaa-cttgatgaaaatggtg |
16207087 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 94 - 233
Target Start/End: Complemental strand, 16215638 - 16215498
Alignment:
| Q |
94 |
tttatcagcacaattagccacgacgtttgtgcaaacaccttcaacttgtattaattgcactgtgtttggagaaagtaa-gnnnnnnntgaagcataaatt |
192 |
Q |
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||||||| ||||| |||||| | || |||||||||||||||||||||||||||||| |||||| ||||| ||||||| | ||||||||||||| |
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| T |
16215638 |
tttatcactacaatcagccacaatgtgtgtgcaaacaccttcaacttgtattaattggactgtgcttggacaaagtaaagaaaaaaatgaagcataaatt |
16215539 |
T |
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| Q |
193 |
agtgagagatttatcatttaaacaaccatgatgaaaatggt |
233 |
Q |
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| T |
16215538 |
agtgagagatttatcatttaaacaaccatgatgaaaatggt |
16215498 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 121 - 234
Target Start/End: Complemental strand, 16220597 - 16220482
Alignment:
| Q |
121 |
tgtgcaaacaccttcaacttgtattaattgcactgtgtttggagaaagtaagnnnnnnn--tgaagcataaattagtgagagatttatcatttaaacaac |
218 |
Q |
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| T |
16220597 |
tgtgcaaacaccttcaacttgtattaattgcactgtgcttggacaaagtaaagaaaaaaaatgaagcataaattaccgagagatttatcatttaaacaac |
16220498 |
T |
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| Q |
219 |
catgatgaaaatggtg |
234 |
Q |
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| T |
16220497 |
catgatgaaaatggtg |
16220482 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 121 - 234
Target Start/End: Complemental strand, 16211385 - 16211270
Alignment:
| Q |
121 |
tgtgcaaacaccttcaacttgtattaattgcactgtgtttggagaaagtaagnnnnnnn--tgaagcataaattagtgagagatttatcatttaaacaac |
218 |
Q |
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|||||||||||||||||||||||||||||| |||||| ||||| ||| ||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
16211385 |
tgtgcaaacaccttcaacttgtattaattggactgtgcttggacaaattaaagaaaaaaaatgaagcataaattagtgagagatttatcatttaaacaac |
16211286 |
T |
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| Q |
219 |
catgatgaaaatggtg |
234 |
Q |
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| T |
16211285 |
catgatgaaattggtg |
16211270 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 97 - 154
Target Start/End: Complemental strand, 16225998 - 16225941
Alignment:
| Q |
97 |
atcagcacaattagccacgacgtttgtgcaaacaccttcaacttgtattaattgcact |
154 |
Q |
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|||||||||||||||||| | |||||||||||||||||| || ||| ||||||||||| |
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| T |
16225998 |
atcagcacaattagccacaatgtttgtgcaaacaccttctacctgtgttaattgcact |
16225941 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 100 - 156
Target Start/End: Complemental strand, 16180917 - 16180861
Alignment:
| Q |
100 |
agcacaattagccacgacgtttgtgcaaacaccttcaacttgtattaattgcactgt |
156 |
Q |
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| T |
16180917 |
agcacaattagccacaatgtttgtgcaaacaccttcaacctcaattaattgcactgt |
16180861 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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